PDB Information

PDB5GAG
MethodELECTRON MICROSCOPY
Host OrganismEscherichia coli
Gene SourceEscherichia coli
Primary Citation
Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
Jomaa, A., Boehringer, D., Leibundgut, M., Ban, N.
Nat Commun
HeaderRibosome
Released2015-11-26
Resolution3.800
CATH Insert Date10 Apr, 2016

PDB Images (68)

PDB Prints

PDB Chains (36)

Chain ID Date inserted into CATH CATH Status
1 11 Apr, 2016 Rejected
2 11 Apr, 2016 Rejected
a 11 Apr, 2016 Chopped
A 11 Apr, 2016 Rejected
b 11 Apr, 2016 Chopped
B 11 Apr, 2016 Rejected
c 11 Apr, 2016 Chopped
C 11 Apr, 2016 Chopped
d 11 Apr, 2016 Chopped
D 11 Apr, 2016 Chopped
e 11 Apr, 2016 Chopped
E 11 Apr, 2016 Chopped
f 11 Apr, 2016 Rejected
F 11 Apr, 2016 Chopped
G 11 Apr, 2016 Chopped
H 11 Apr, 2016 Holding pen
i 11 Apr, 2016 Chopped
I 11 Apr, 2016 Chopped
J 11 Apr, 2016 Chopped
k 11 Apr, 2016 Rejected
K 11 Apr, 2016 Holding pen
L 11 Apr, 2016 Chopped
M 11 Apr, 2016 Chopped
N 11 Apr, 2016 Chopped
O 11 Apr, 2016 Chopped
P 11 Apr, 2016 Chopped
Q 11 Apr, 2016 Chopped
R 11 Apr, 2016 Holding pen
S 11 Apr, 2016 Chopped
T 11 Apr, 2016 Chopped
U 11 Apr, 2016 Chopped
V 11 Apr, 2016 Chopped
W 11 Apr, 2016 Chopped
X 11 Apr, 2016 Chopped
Y 11 Apr, 2016 Chopped
Z 11 Apr, 2016 Chopped

CATH Domains (31)

Domain ID Date inserted into CATH Superfamily CATH Status
5gaga00 12 May, 2016 3.30.1390.20 Assigned
5gagb00 12 May, 2016 Holding pen
5gagc00 12 May, 2016 2.20.28.120 Assigned
5gagC01 11 May, 2017 2.40.50.140 Assigned
5gagC02 11 May, 2017 Holding pen
5gagC03 11 May, 2017 4.10.950.10 Assigned
5gagd00 12 May, 2016 New
5gagD00 12 May, 2016 Holding pen
5gage00 12 May, 2016 Holding pen
5gagE00 12 May, 2016 Holding pen
5gagF00 12 May, 2016 3.30.1440.10 Assigned
5gagG01 12 May, 2016 3.90.930.12 Assigned
5gagG02 12 May, 2016 3.90.930.12 Assigned
5gagi00 29 Nov, 2016 1.10.260.30 Assigned
5gagI00 12 May, 2016 3.30.70.1730 Assigned
5gagJ01 12 May, 2016 3.30.1550.10 Assigned
5gagJ02 12 May, 2016 1.10.10.250 Assigned
5gagL00 12 May, 2016 2.40.150.20 Assigned
5gagM00 12 May, 2016 Holding pen
5gagN01 12 May, 2016 3.90.1170.10 Assigned
5gagO01 12 May, 2016 3.90.1030.10 Assigned
5gagP00 12 May, 2016 3.30.420.100 Assigned
5gagQ00 12 May, 2016 Holding pen
5gagS00 12 May, 2016 Holding pen
5gagT00 12 May, 2016 3.90.470.10 Assigned
5gagU00 12 May, 2016 3.30.70.330 Assigned
5gagV00 12 May, 2016 Holding pen
5gagW00 12 May, 2016 2.40.240.10 Assigned
5gagX01 12 May, 2016 Holding pen
5gagY00 12 May, 2016 Holding pen
5gagZ00 12 May, 2016 Holding pen

UniProtKB Entries (28)

Accession Gene ID Taxon Description
P0C018 RL18_ECOLI Escherichia coli K-12 50S ribosomal protein L18
P00634 PPB_ECOLI Escherichia coli K-12 Alkaline phosphatase
P0A7N9 RL33_ECOLI Escherichia coli K-12 50S ribosomal protein L33
P0A7L8 RL27_ECOLI Escherichia coli K-12 50S ribosomal protein L27
P0A7M6 RL29_ECOLI Escherichia coli K-12 50S ribosomal protein L29
P0AG55 RL6_ECOLI Escherichia coli K-12 50S ribosomal protein L6
P0AGD7 SRP54_ECOLI Escherichia coli K-12 Signal recognition particle protein
P0A7K6 RL19_ECOLI Escherichia coli K-12 50S ribosomal protein L19
P60422 RL2_ECOLI Escherichia coli K-12 50S ribosomal protein L2
P62399 RL5_ECOLI Escherichia coli K-12 50S ribosomal protein L5
P0ADY7 RL16_ECOLI Escherichia coli K-12 50S ribosomal protein L16
P60438 RL3_ECOLI Escherichia coli K-12 50S ribosomal protein L3
P0AA10 RL13_ECOLI Escherichia coli K-12 50S ribosomal protein L13
P61175 RL22_ECOLI Escherichia coli K-12 50S ribosomal protein L22
P0ADY3 RL14_ECOLI Escherichia coli K-12 50S ribosomal protein L14
P68919 RL25_ECOLI Escherichia coli K-12 50S ribosomal protein L25
P0A7M2 RL28_ECOLI Escherichia coli K-12 50S ribosomal protein L28
P0A7L3 RL20_ECOLI Escherichia coli K-12 50S ribosomal protein L20
P0A7Q1 RL35_ECOLI Escherichia coli K-12 50S ribosomal protein L35
P0A7R1 RL9_ECOLI Escherichia coli K-12 50S ribosomal protein L9
P60723 RL4_ECOLI Escherichia coli K-12 50S ribosomal protein L4
P0AG51 RL30_ECOLI Escherichia coli K-12 50S ribosomal protein L30
P0A7J7 RL11_ECOLI Escherichia coli K-12 50S ribosomal protein L11
P02413 RL15_ECOLI Escherichia coli K-12 50S ribosomal protein L15
P0A7J3 RL10_ECOLI Escherichia coli K-12 50S ribosomal protein L10
P0ADZ0 RL23_ECOLI Escherichia coli K-12 50S ribosomal protein L23
P0AG44 RL17_ECOLI Escherichia coli K-12 50S ribosomal protein L17
P60624 RL24_ECOLI Escherichia coli K-12 50S ribosomal protein L24