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PDB 5xxu

PDB Information

PDB5XXU
MethodELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation
Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii
Li, Z., Guo, Q., Zheng, L., Ji, Y., Xie, Y.T., Lai, D.H., Lun, Z.R., Suo, X., Gao, N.
Cell Res.
HeaderRibosome
Released2017-07-05
Resolution3.350
CATH Insert Date14 Nov, 2017

PDB Images (76)

PDB Prints

PDB Chains (34)

Chain ID Date inserted into CATH CATH Status
2 14 Nov, 2017 Rejected
a 14 Nov, 2017 Chopped
A 14 Nov, 2017 Chopped
b 14 Nov, 2017 Chopped
B 14 Nov, 2017 Chopped
c 14 Nov, 2017 Chopped
C 14 Nov, 2017 Chopped
d 14 Nov, 2017 Chopped
D 14 Nov, 2017 Chopped
e 14 Nov, 2017 Holding pen
E 14 Nov, 2017 Chopped
f 14 Nov, 2017 Chopped
F 14 Nov, 2017 Chopped
G 14 Nov, 2017 Chopped
H 14 Nov, 2017 Chopped
I 14 Nov, 2017 Chopped
J 14 Nov, 2017 Chopped
K 14 Nov, 2017 Chopped
L 14 Nov, 2017 Chopped
m 14 Nov, 2017 Rejected
M 14 Nov, 2017 Chopped
N 14 Nov, 2017 Chopped
O 14 Nov, 2017 Chopped
P 14 Nov, 2017 Chopped
Q 14 Nov, 2017 Chopped
R 14 Nov, 2017 Chopped
S 14 Nov, 2017 Chopped
T 14 Nov, 2017 Chopped
U 14 Nov, 2017 Chopped
V 14 Nov, 2017 Chopped
W 14 Nov, 2017 Chopped
X 14 Nov, 2017 Chopped
Y 14 Nov, 2017 Chopped
Z 14 Nov, 2017 Chopped

CATH Domains (41)

Domain ID Date inserted into CATH Superfamily CATH Status
5xxua00 10 Dec, 2017 3.30.1740.20 Assigned
5xxuA01 10 Dec, 2017 3.40.50.10490 Assigned
5xxub00 10 Dec, 2017 2.20.25.100 Assigned
5xxuB01 10 Dec, 2017 Holding pen
5xxuc00 10 Dec, 2017 2.40.50.140 Assigned
5xxuC01 10 Dec, 2017 3.30.160.20 Assigned
5xxuC02 10 Dec, 2017 3.30.230.10 Assigned
5xxud00 10 Dec, 2017 4.10.830.10 Assigned
5xxuD01 10 Dec, 2017 3.30.300.20 Assigned
5xxuD02 10 Dec, 2017 3.30.1140.32 Assigned
5xxuE01 10 Dec, 2017 3.10.290.10 Assigned
5xxuE02 10 Dec, 2017 2.40.50.740 Assigned
5xxuE03 10 Dec, 2017 2.30.30.30 Assigned
5xxuf00 16 Dec, 2017 Write scan list
5xxuF00 10 Dec, 2017 1.10.455.10 Assigned
5xxuG01 10 Dec, 2017 Holding pen
5xxuG02 10 Dec, 2017 1.20.5.2650 Assigned
5xxuH00 10 Dec, 2017 Holding pen
5xxuI01 10 Dec, 2017 Holding pen
5xxuI02 10 Dec, 2017 Holding pen
5xxuI03 10 Dec, 2017 1.10.168.20 Assigned
5xxuJ01 10 Dec, 2017 Holding pen
5xxuK00 10 Dec, 2017 1.10.10.10 Assigned
5xxuL00 10 Dec, 2017 2.40.50.1000 Assigned
5xxuM00 10 Dec, 2017 3.30.1330.30 Assigned
5xxuN01 10 Dec, 2017 Holding pen
5xxuN02 10 Dec, 2017 1.10.287.10 Assigned
5xxuO00 10 Dec, 2017 3.30.420.80 Assigned
5xxuP00 10 Dec, 2017 Holding pen
5xxuQ00 10 Dec, 2017 3.30.230.10 Assigned
5xxuR01 10 Dec, 2017 1.10.60.20 Assigned
5xxuS01 10 Dec, 2017 1.10.8.50 Assigned
5xxuS02 10 Dec, 2017 Holding pen
5xxuT00 10 Dec, 2017 Holding pen
5xxuU00 10 Dec, 2017 3.30.70.600 Assigned
5xxuV00 10 Dec, 2017 3.30.1230.20 Assigned
5xxuW01 10 Dec, 2017 3.30.1370.30 Assigned
5xxuW02 10 Dec, 2017 3.30.1490.10 Assigned
5xxuX00 10 Dec, 2017 Holding pen
5xxuY00 10 Dec, 2017 3.30.70.3370 Assigned
5xxuZ00 10 Dec, 2017 Holding pen

UniProtKB Entries (29)

Accession Gene ID Taxon Description
A0A125YS47 A0A125YS47_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S21
B9PVR5 B9PVR5_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S6
B9PZF2 B9PZF2_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S2, putative
A0A125YJ29 A0A125YJ29_TOXGV Toxoplasma gondii VEG Ribosomal protein RPS28
B9PMU7 B9PMU7_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S11, putative
A0A125YKH1 A0A125YKH1_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S24
A0A125YVX8 A0A125YVX8_TOXGV Toxoplasma gondii VEG Ribosomal protein RPS27
Q8MPF7 RSSA_TOXGO Toxoplasma gondii 40S ribosomal protein SA
B9PX63 B9PX63_TOXGV Toxoplasma gondii VEG Ribosomal protein RPS10
B6KC70 B6KC70_TOXGV Toxoplasma gondii VEG Ribosomal protein RPS16
B9PQ37 B9PQ37_TOXGV Toxoplasma gondii VEG Ribosomal-ubiquitin protein RPS27A
B9PP49 B9PP49_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S26
B9PPE8 B9PPE8_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S5, putative
A0A125YXW4 A0A125YXW4_TOXGV Toxoplasma gondii VEG 40s ribosomal protein S14, putative
A0A0F7UXI8 A0A0F7UXI8_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S3, putative
A0A125YMR9 A0A125YMR9_TOXGV Toxoplasma gondii VEG Ribosomal protein RPS19
B9PHL8 B9PHL8_TOXGV Toxoplasma gondii VEG Ribosomal protein RPS23
B9Q056 B9Q056_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S12
B6KQG9 B6KQG9_TOXGV Toxoplasma gondii VEG 40s ribosomal protein S20, putative
B9PXH2 B9PXH2_TOXGO Toxoplasma gondii 40s ribosomal protein s17, putative
B9PMB3 B9PMB3_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S18, putative
A0A125YJX3 A0A125YJX3_TOXGV Toxoplasma gondii VEG Ribosomal protein RPS15A
A0A125YSG6 A0A125YSG6_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S13, putative
B9PQU8 B9PQU8_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S9, putative
A0A0F7UYM7 A0A0F7UYM7_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S29, putative
B6KGK3 B6KGK3_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S8
Q1JSZ0 Q1JSZ0_TOXGO Toxoplasma gondii 40S ribosomal protein S4
B9PSN8 B9PSN8_TOXGV Toxoplasma gondii VEG 40S ribosomal protein S15, putative
S7V273 S7V273_TOXGG Toxoplasma gondii GT1 Ribosomal protein RPS25
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