PDB 5dm6

PDB Information

PDB5DM6
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A.
Kaminishi, T., Schedlbauer, A., Fabbretti, A., Brandi, L., Ochoa-Lizarralde, B., He, C.G., Milon, P., Connell, S.R., Gualerzi, C.O., Fucini, P.
Nucleic Acids Res.
HeaderRibosome
Released2015-09-08
Resolution2.900
CATH Insert Date29 Nov, 2015

PDB Images (61)

PDB Prints

PDB Chains (30)

Chain ID Date inserted into CATH CATH Status
0 30 Nov, 2015 Chopped
1 30 Nov, 2015 Chopped
2 30 Nov, 2015 Chopped
3 30 Nov, 2015 Chopped
A 30 Nov, 2015 Holding pen
B 30 Nov, 2015 Chopped
C 30 Nov, 2015 Chopped
D 30 Nov, 2015 Chopped
E 30 Nov, 2015 Chopped
F 30 Nov, 2015 Chopped
G 30 Nov, 2015 Chopped
H 30 Nov, 2015 Chopped
I 30 Nov, 2015 Chopped
J 30 Nov, 2015 Chopped
K 30 Nov, 2015 Chopped
L 30 Nov, 2015 Chopped
M 30 Nov, 2015 Chopped
N 30 Nov, 2015 Holding pen
O 30 Nov, 2015 Chopped
P 30 Nov, 2015 Chopped
Q 30 Nov, 2015 Chopped
R 30 Nov, 2015 Chopped
S 30 Nov, 2015 Chopped
T 30 Nov, 2015 Chopped
U 30 Nov, 2015 Chopped
V 30 Nov, 2015 Chopped
W 30 Nov, 2015 Chopped
X 30 Nov, 2015 Rejected
Y 30 Nov, 2015 Rejected
Z 30 Nov, 2015 Chopped

CATH Domains (30)

Domain ID Date inserted into CATH Superfamily CATH Status
5dm6001 03 Dec, 2015 3.30.190.20 Assigned
5dm6002 03 Dec, 2015 3.40.50.790 Assigned
5dm6100 03 Dec, 2015 2.20.28.120 Assigned
5dm6200 02 Dec, 2015 1.10.287.3980 Assigned
5dm6300 02 Dec, 2015 4.10.410.60 Assigned
5dm6B00 02 Dec, 2015 Holding pen
5dm6C00 02 Dec, 2015 Holding pen
5dm6D00 20 Mar, 2016 3.30.1440.10 Assigned
5dm6E01 02 Dec, 2015 3.90.930.12 Assigned
5dm6E02 02 Dec, 2015 3.90.930.12 Assigned
5dm6F01 02 Dec, 2015 3.30.1550.10 Assigned
5dm6F02 02 Dec, 2015 1.10.10.250 Assigned
5dm6G00 07 Dec, 2017 Holding pen
5dm6H00 02 Dec, 2015 2.40.150.20 Assigned
5dm6I00 21 Mar, 2016 Holding pen
5dm6J01 02 Dec, 2015 3.90.1170.10 Assigned
5dm6K00 02 Dec, 2015 3.90.1030.10 Assigned
5dm6L01 02 Dec, 2015 3.30.420.100 Assigned
5dm6M00 02 Dec, 2015 Holding pen
5dm6O00 02 Dec, 2015 Holding pen
5dm6P00 02 Dec, 2015 3.90.470.10 Assigned
5dm6Q00 02 Dec, 2015 3.30.70.330 Assigned
5dm6R00 02 Dec, 2015 Holding pen
5dm6S01 02 Dec, 2015 2.40.240.10 Assigned
5dm6S02 02 Dec, 2015 2.170.120.20 Assigned
5dm6T01 03 Dec, 2015 Holding pen
5dm6U00 02 Dec, 2015 2.30.170.40 Assigned
5dm6V00 02 Dec, 2015 1.10.287.310 Assigned
5dm6W00 02 Dec, 2015 3.30.1390.20 Assigned
5dm6Z01 02 Dec, 2015 Holding pen

UniProtKB Entries (27)

Accession Gene ID Taxon Description
Q9RRG8 RL28_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L28
Q9RSJ5 RL17_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L17
Q9RXJ9 RL2_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L2
Q9RSW6 RL35_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L35
Q9RWB4 RL19_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L19
Q9RXJ0 RL5_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L5
Q9RXY1 RL13_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L13
Q9RSS8 RL1_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L1
Q9RXJ1 RL24_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L24
Q9RSS4 RL33_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L33
Q9RSL2 RL18_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L18
Q9RXK1 RL4_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L4
Q9RXJ4 RL29_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L29
Q9RXK2 RL3_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L3
P49228 RL32_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L32
Q9RSL3 RL6_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L6
Q9RXJ2 RL14_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L14
Q9RSH2 RL34_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L34
Q9RSW7 RL20_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L20
Q9RXJ7 RL22_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L22
Q9RY65 RL27_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L27
Q9RSL0 RL30_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L30
Q9RX88 RL25_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L25
Q9RXJ5 RL16_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L16
Q9RSK9 RL15_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L15
Q9RXK0 RL23_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L23
Q9RSS7 RL11_DEIRA Deinococcus radiodurans R1 50S ribosomal protein L11