PDB 5xyi

PDB Links
Overview

PDB Information

PDB	5XYI
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii Li, Z., Guo, Q., Zheng, L., Ji, Y., Xie, Y.T., Lai, D.H., Lun, Z.R., Suo, X., Gao, N. Cell Res.
Header	Ribosome
Released	2017-07-08
Resolution	3.350
CATH Insert Date	14 Nov, 2017

PDB Images (72)

5xyi

PDB 5xyi

5xyi2

PDB Chain 5xyi2

5xyia

PDB Chain 5xyia

5xyiA

PDB Chain 5xyiA

5xyib

PDB Chain 5xyib

5xyiB

PDB Chain 5xyiB

5xyic

PDB Chain 5xyic

5xyiC

PDB Chain 5xyiC

5xyid

PDB Chain 5xyid

5xyiD

PDB Chain 5xyiD

5xyie

PDB Chain 5xyie

5xyiE

PDB Chain 5xyiE

5xyiF

PDB Chain 5xyiF

5xyig

PDB Chain 5xyig

5xyiG

PDB Chain 5xyiG

5xyiH

PDB Chain 5xyiH

5xyiI

PDB Chain 5xyiI

5xyiJ

PDB Chain 5xyiJ

5xyiK

PDB Chain 5xyiK

5xyiL

PDB Chain 5xyiL

5xyiM

PDB Chain 5xyiM

5xyin

PDB Chain 5xyin

5xyiN

PDB Chain 5xyiN

5xyiO

PDB Chain 5xyiO

5xyiP

PDB Chain 5xyiP

5xyiQ

PDB Chain 5xyiQ

5xyiR

PDB Chain 5xyiR

5xyiS

PDB Chain 5xyiS

5xyiT

PDB Chain 5xyiT

5xyiU

PDB Chain 5xyiU

5xyiV

PDB Chain 5xyiV

5xyiW

PDB Chain 5xyiW

5xyiX

PDB Chain 5xyiX

5xyiY

PDB Chain 5xyiY

5xyiZ

PDB Chain 5xyiZ

5xyia00

CATH Domain 5xyia00

5xyiA01

CATH Domain 5xyiA01

5xyib00

CATH Domain 5xyib00

5xyiB00

CATH Domain 5xyiB00

5xyic00

CATH Domain 5xyic00

5xyiC01

CATH Domain 5xyiC01

5xyiC02

CATH Domain 5xyiC02

5xyid00

CATH Domain 5xyid00

5xyiD01

CATH Domain 5xyiD01

5xyiD02

CATH Domain 5xyiD02

5xyiE01

CATH Domain 5xyiE01

5xyiE02

CATH Domain 5xyiE02

5xyiE03

CATH Domain 5xyiE03

5xyiF00

CATH Domain 5xyiF00

5xyig01

CATH Domain 5xyig01

5xyiH00

CATH Domain 5xyiH00

5xyiI01

CATH Domain 5xyiI01

5xyiJ01

CATH Domain 5xyiJ01

5xyiK00

CATH Domain 5xyiK00

5xyiL00

CATH Domain 5xyiL00

5xyiM00

CATH Domain 5xyiM00

5xyiN01

CATH Domain 5xyiN01

5xyiN02

CATH Domain 5xyiN02

5xyiO00

CATH Domain 5xyiO00

5xyiP00

CATH Domain 5xyiP00

5xyiQ00

CATH Domain 5xyiQ00

5xyiR01

CATH Domain 5xyiR01

5xyiS01

CATH Domain 5xyiS01

5xyiS02

CATH Domain 5xyiS02

5xyiT00

CATH Domain 5xyiT00

5xyiU00

CATH Domain 5xyiU00

5xyiV00

CATH Domain 5xyiV00

5xyiW01

CATH Domain 5xyiW01

5xyiW02

CATH Domain 5xyiW02

5xyiX00

CATH Domain 5xyiX00

5xyiY00

CATH Domain 5xyiY00

5xyiZ00

CATH Domain 5xyiZ00

PDB Prints

PDB Chains (34)

Chain ID	Date inserted into CATH	CATH Status
2	14 Nov, 2017	Rejected
a	14 Nov, 2017	Chopped
A	14 Nov, 2017	Chopped
b	14 Nov, 2017	Chopped
B	14 Nov, 2017	Chopped
c	14 Nov, 2017	Chopped
C	14 Nov, 2017	Chopped
d	14 Nov, 2017	Chopped
D	14 Nov, 2017	Chopped
e	14 Nov, 2017	Holding pen
E	14 Nov, 2017	Chopped
F	14 Nov, 2017	Chopped
g	14 Nov, 2017	Chopped
G	14 Nov, 2017	Rejected
H	14 Nov, 2017	Chopped
I	14 Nov, 2017	Chopped
J	14 Nov, 2017	Chopped
K	14 Nov, 2017	Chopped
L	14 Nov, 2017	Chopped
M	14 Nov, 2017	Chopped
n	14 Nov, 2017	Rejected
N	14 Nov, 2017	Chopped
O	14 Nov, 2017	Chopped
P	14 Nov, 2017	Chopped
Q	14 Nov, 2017	Chopped
R	14 Nov, 2017	Chopped
S	14 Nov, 2017	Chopped
T	14 Nov, 2017	Chopped
U	14 Nov, 2017	Chopped
V	14 Nov, 2017	Chopped
W	14 Nov, 2017	Chopped
X	14 Nov, 2017	Chopped
Y	14 Nov, 2017	Chopped
Z	14 Nov, 2017	Chopped

CATH Domains (37)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5xyia00	10 Dec, 2017	3.30.1740.20	Assigned
5xyiA01	10 Dec, 2017	3.40.50.10490	Assigned
5xyib00	10 Dec, 2017	2.20.25.100	Assigned
5xyiB00	16 Dec, 2017		Write scan list
5xyic00	10 Dec, 2017	2.40.50.140	Assigned
5xyiC01	10 Dec, 2017	3.30.160.20	Assigned
5xyiC02	10 Dec, 2017	3.30.230.10	Assigned
5xyid00	10 Dec, 2017	4.10.830.10	Assigned
5xyiD01	10 Dec, 2017	3.30.300.20	Assigned
5xyiD02	10 Dec, 2017	3.30.1140.32	Assigned
5xyiE01	10 Dec, 2017	3.10.290.10	Assigned
5xyiE02	10 Dec, 2017	2.40.50.740	Assigned
5xyiE03	10 Dec, 2017	2.30.30.30	Assigned
5xyiF00	10 Dec, 2017	1.10.455.10	Assigned
5xyig01	10 Dec, 2017	2.130.10.10	Assigned
5xyiH00	16 Dec, 2017		Holding pen
5xyiI01	10 Dec, 2017		Holding pen
5xyiJ01	10 Dec, 2017		Holding pen
5xyiK00	10 Dec, 2017	1.10.10.10	Assigned
5xyiL00	10 Dec, 2017	2.40.50.1000	Assigned
5xyiM00	10 Dec, 2017		Write scan list
5xyiN01	10 Dec, 2017		Holding pen
5xyiN02	10 Dec, 2017	1.10.287.10	Assigned
5xyiO00	10 Dec, 2017	3.30.420.80	Assigned
5xyiP00	10 Dec, 2017		Write scan list
5xyiQ00	10 Dec, 2017	3.30.230.10	Assigned
5xyiR01	10 Dec, 2017	1.10.60.20	Assigned
5xyiS01	10 Dec, 2017	1.10.8.50	Assigned
5xyiS02	10 Dec, 2017		Holding pen
5xyiT00	16 Dec, 2017		Write scan list
5xyiU00	10 Dec, 2017	3.30.70.600	Assigned
5xyiV00	10 Dec, 2017	3.30.1230.20	Assigned
5xyiW01	10 Dec, 2017	3.30.1370.30	Assigned
5xyiW02	10 Dec, 2017	3.30.1490.10	Assigned
5xyiX00	10 Dec, 2017		Holding pen
5xyiY00	10 Dec, 2017	3.30.70.3370	Assigned
5xyiZ00	16 Dec, 2017		Write scan list

UniProtKB Entries (29)

Accession	Gene ID	Taxon	Description
A2E4S6	A2E4S6_TRIVA	Trichomonas vaginalis	40s ribosomal protein S5-B, putative
A2FA40	A2FA40_TRIVA	Trichomonas vaginalis	Ribosomal protein L7Ae, putative
A2D919	A2D919_TRIVA	Trichomonas vaginalis	40S ribosomal protein S16, putative
A2F0H5	A2F0H5_TRIVA	Trichomonas vaginalis	Ribosomal protein S24e, putative
A2ER97	A2ER97_TRIVA	Trichomonas vaginalis	Uncharacterized protein
A2EG54	A2EG54_TRIVA	Trichomonas vaginalis	Ribosomal protein S19e, putative
A2DYA8	A2DYA8_TRIVA	Trichomonas vaginalis	40S ribosomal protein S29, putative
A2DST7	A2DST7_TRIVA	Trichomonas vaginalis	40S ribosomal protein S26
A2DPS3	A2DPS3_TRIVA	Trichomonas vaginalis	40S ribosomal protein S17-B, putative
A2EFE7	A2EFE7_TRIVA	Trichomonas vaginalis	40S ribosomal protein SA
Q76KS8	Q76KS8_TRIVA	Trichomonas vaginalis	Ribosomal protein S14
A2ELV7	A2ELV7_TRIVA	Trichomonas vaginalis	Guanine nucleotide-binding protein beta subunit, putative
A2DTR8	A2DTR8_TRIVA	Trichomonas vaginalis	Ribosomal protein S13p/S18e, putative
A2D9L2	A2D9L2_TRIVA	Trichomonas vaginalis	40S ribosomal protein S13, putative
A2FFS8	A2FFS8_TRIVA	Trichomonas vaginalis	40S ribosomal protein S21
A2D895	A2D895_TRIVA	Trichomonas vaginalis	40S ribosomal protein S23, putative
A2DQN8	A2DQN8_TRIVA	Trichomonas vaginalis	Uncharacterized protein
A2EHK3	A2EHK3_TRIVA	Trichomonas vaginalis	Uncharacterized protein
A2DLW4	A2DLW4_TRIVA	Trichomonas vaginalis	Ribosomal protein S15a
A2DNY3	A2DNY3_TRIVA	Trichomonas vaginalis	Uncharacterized protein
A2DVD8	A2DVD8_TRIVA	Trichomonas vaginalis	Ribosomal protein S19, putative
A2DEJ9	A2DEJ9_TRIVA	Trichomonas vaginalis	40S ribosomal protein S6
A2E1L5	A2E1L5_TRIVA	Trichomonas vaginalis	40S ribosomal protein S8
A2DHU8	A2DHU8_TRIVA	Trichomonas vaginalis	Uncharacterized protein
A2FDE0	A2FDE0_TRIVA	Trichomonas vaginalis	Ribosomal protein S10p/S20e, putative
A2EBA2	A2EBA2_TRIVA	Trichomonas vaginalis	Plectin/S10 domain containing protein
A2FC75	A2FC75_TRIVA	Trichomonas vaginalis	40S ribosomal protein S4
A2DIM3	A2DIM3_TRIVA	Trichomonas vaginalis	Ribosomal protein S3, putative
A2FBZ2	A2FBZ2_TRIVA	Trichomonas vaginalis	40S ribosomal protein S27