PDB 5it9

PDB Information

PDB5IT9
MethodELECTRON MICROSCOPY
Host OrganismEscherichia coli
Gene SourceCricket paralysis virus
Primary Citation
Structural characterization of ribosome recruitment and translocation by type IV IRES.
Murray, J., Savva, C.G., Shin, B.S., Dever, T.E., Ramakrishnan, V., Fernandez, I.S.
Elife
HeaderRibosome
Released2016-03-16
Resolution3.800
CATH Insert Date29 May, 2016

PDB Images (78)

PDB Prints

PDB Chains (35)

Chain ID Date inserted into CATH CATH Status
2 30 May, 2016 Rejected
a 30 May, 2016 Chopped
A 30 May, 2016 Chopped
b 30 May, 2016 Chopped
B 30 May, 2016 Chopped
c 30 May, 2016 Chopped
C 30 May, 2016 Chopped
d 30 May, 2016 Chopped
D 30 May, 2016 Chopped
e 30 May, 2016 Holding pen
E 30 May, 2016 Chopped
f 30 May, 2016 Chopped
F 30 May, 2016 Chopped
g 30 May, 2016 Chopped
G 30 May, 2016 Chopped
H 30 May, 2016 Chopped
i 30 May, 2016 Rejected
I 30 May, 2016 Chopped
J 30 May, 2016 Chopped
K 30 May, 2016 Chopped
L 30 May, 2016 Chopped
M 30 May, 2016 Chopped
N 30 May, 2016 Chopped
O 30 May, 2016 Chopped
P 30 May, 2016 Chopped
Q 30 May, 2016 Chopped
R 30 May, 2016 Chopped
S 30 May, 2016 Chopped
T 30 May, 2016 Chopped
U 30 May, 2016 Chopped
V 30 May, 2016 Chopped
W 30 May, 2016 Chopped
X 30 May, 2016 Chopped
Y 30 May, 2016 Chopped
Z 30 May, 2016 Chopped

CATH Domains (42)

Domain ID Date inserted into CATH Superfamily CATH Status
5it9a00 18 Jul, 2016 3.30.1740.20 Assigned
5it9A01 18 Jul, 2016 3.40.50.10490 Assigned
5it9b00 18 Jul, 2016 2.20.25.100 Assigned
5it9B01 30 Nov, 2016 Holding pen
5it9c00 18 Jul, 2016 2.40.50.140 Assigned
5it9C01 18 Jul, 2016 3.30.160.20 Assigned
5it9C02 18 Jul, 2016 3.30.230.10 Assigned
5it9d00 18 Jul, 2016 4.10.830.10 Assigned
5it9D01 18 Jul, 2016 3.30.300.20 Assigned
5it9D02 18 Jul, 2016 3.30.1140.32 Assigned
5it9E01 18 Jul, 2016 3.10.290.10 Assigned
5it9E02 18 Jul, 2016 2.40.50.740 Assigned
5it9E03 18 Jul, 2016 2.30.30.30 Assigned
5it9f00 18 Jul, 2016 6.20.50.150 Assigned
5it9F00 18 Jul, 2016 1.10.455.10 Assigned
5it9g01 18 Jul, 2016 2.130.10.10 Assigned
5it9G01 18 Jul, 2016 Holding pen
5it9G02 18 Jul, 2016 1.20.5.2650 Assigned
5it9H00 18 Jul, 2016 Holding pen
5it9I01 18 Jul, 2016 Holding pen
5it9I02 18 Jul, 2016 Holding pen
5it9I03 18 Jul, 2016 1.10.168.20 Assigned
5it9J01 18 Jul, 2016 Holding pen
5it9K00 18 Jul, 2016 1.10.10.10 Assigned
5it9L00 18 Jul, 2016 2.40.50.1000 Assigned
5it9M00 18 Jul, 2016 3.30.1330.30 Assigned
5it9N01 18 Jul, 2016 Holding pen
5it9N02 18 Jul, 2016 1.10.287.10 Assigned
5it9O00 18 Jul, 2016 3.30.420.80 Assigned
5it9P00 18 Jul, 2016 Holding pen
5it9Q00 18 Jul, 2016 3.30.230.10 Assigned
5it9R01 18 Jul, 2016 1.10.60.20 Assigned
5it9S01 18 Jul, 2016 1.10.8.50 Assigned
5it9S02 18 Jul, 2016 Holding pen
5it9T00 18 Jul, 2016 Holding pen
5it9U00 18 Jul, 2016 3.30.70.600 Assigned
5it9V00 18 Jul, 2016 3.30.1230.20 Assigned
5it9W01 18 Jul, 2016 3.30.1370.30 Assigned
5it9W02 18 Jul, 2016 3.30.1490.10 Assigned
5it9X00 18 Jul, 2016 Holding pen
5it9Y00 18 Jul, 2016 3.30.70.3370 Assigned
5it9Z00 18 Jul, 2016 1.10.10.10 Assigned

UniProtKB Entries (30)

Accession Gene ID Taxon Description
Q6CM04 RS6_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S6
P33285 RS28_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S28
Q6CIM1 Q6CIM1_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0F25542p
Q6CS01 Q6CS01_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S26
Q6CM18 Q6CM18_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0E23673p
Q6CN12 RSSA_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S0
Q6CKL3 Q6CKL3_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0F09812p
Q6CKV4 Q6CKV4_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0F07843p
Q6CVZ5 Q6CVZ5_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0B08173p
P27069 RS14_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S14
Q6CNI7 Q6CNI7_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0E12277p
Q875M3 Q875M3_KLULC Kluyveromyces lactis RPS23
Q6CJK0 Q6CJK0_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0F18040p
Q875N2 RS16_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S16
Q6CWJ2 Q6CWJ2_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S4
Q6CXM0 Q6CXM0_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0A07194p
Q6CW21 RS22_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S22
Q6CNL2 Q6CNL2_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S27
Q6CPG3 RS29_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S29
Q6CRK7 Q6CRK7_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0D08305p
Q6CW78 Q6CW78_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0B06182p
Q6CX80 Q6CX80_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0A10483p
Q6CWU3 Q6CWU3_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0B01474p
Q6CU44 Q6CU44_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S24
Q6CXT6 RS21_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S21
Q6CMG3 Q6CMG3_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S8
Q6CRA3 Q6CRA3_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0D10659p
P69061 RS27A_KLULA Kluyveromyces lactis NRRL Y-1140 Ubiquitin-40S ribosomal protein S27a
Q6CWT9 Q6CWT9_KLULA Kluyveromyces lactis NRRL Y-1140 KLLA0B01562p
Q6CLU4 Q6CLU4_KLULA Kluyveromyces lactis NRRL Y-1140 40S ribosomal protein S12