The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 4: Cell cycle checkpoint protein RAD1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 5 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Damaged DNA binding GO:0003684
Interacting selectively and non-covalently with damaged DNA.
9 O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
9 O60671 (/IPI) O60671 (/IPI) O60671 (/IPI) O60671 (/IPI) O60671 (/IPI) O60671 (/IPI) O60671 (/IPI) O60671 (/IPI) O60671 (/IPI)
3'-5' exonuclease activity GO:0008408
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
9 O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA)
3'-5' exonuclease activity GO:0008408
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
2 Q8AY27 (/ISS) Q9QWZ1 (/ISS)
3'-5' exonuclease activity GO:0008408
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
1 Q9QWZ1 (/ISO)

There are 11 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA damage checkpoint GO:0000077
A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds.
9 O60671 (/IMP) O60671 (/IMP) O60671 (/IMP) O60671 (/IMP) O60671 (/IMP) O60671 (/IMP) O60671 (/IMP) O60671 (/IMP) O60671 (/IMP)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
9 O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS)
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
9 O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS)
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
9 O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS)
Substantia nigra development GO:0021762
The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).
9 O60671 (/HEP) O60671 (/HEP) O60671 (/HEP) O60671 (/HEP) O60671 (/HEP) O60671 (/HEP) O60671 (/HEP) O60671 (/HEP) O60671 (/HEP)
Meiotic recombination checkpoint GO:0051598
A checkpoint that acts during late prophase I (pachytene) and prevents segregation of homologous chromosomes until recombination is completed, ensuring proper distribution of the genetic material to the gametes.
9 O60671 (/IGI) O60671 (/IGI) O60671 (/IGI) O60671 (/IGI) O60671 (/IGI) O60671 (/IGI) O60671 (/IGI) O60671 (/IGI) O60671 (/IGI)
Cellular response to ionizing radiation GO:0071479
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
9 O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA)
Regulation of signal transduction by p53 class mediator GO:1901796
Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
9 O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS)
DNA damage checkpoint GO:0000077
A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds.
1 Q9QWZ1 (/ISO)
Meiotic recombination checkpoint GO:0051598
A checkpoint that acts during late prophase I (pachytene) and prevents segregation of homologous chromosomes until recombination is completed, ensuring proper distribution of the genetic material to the gametes.
1 Q9QWZ1 (/ISO)
Cellular response to ionizing radiation GO:0071479
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
1 Q9QWZ1 (/ISO)

There are 8 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
18 A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) O60671 (/IDA)
(8 more)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
18 A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) A0A024R045 (/IDA) O60671 (/IDA)
(8 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
9 O60671 (/IC) O60671 (/IC) O60671 (/IC) O60671 (/IC) O60671 (/IC) O60671 (/IC) O60671 (/IC) O60671 (/IC) O60671 (/IC)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
9 O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS) O60671 (/TAS)
Chromosome GO:0005694
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
9 O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA) O60671 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q9QWZ1 (/ISO)
Chromosome GO:0005694
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
1 Q9QWZ1 (/ISO)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
1 Q9QWZ1 (/ISO)