The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Peptidase C12, ubiquitin carboxyl-terminal hydrolase
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Ubiquitin carboxyl-terminal hydrolase

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 11 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Thiol-dependent ubiquitin-specific protease activity GO:0004843
Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
12 Q9XZ61 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(2 more)
Proteasome binding GO:0070628
Interacting selectively and non-covalently with a proteasome, a large multisubunit protein complex that catalyzes protein degradation.
12 Q9XSJ0 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(2 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
11 Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA) Q9Y5K5 (/HDA)
(1 more)
Endopeptidase inhibitor activity GO:0004866
Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
11 Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP)
(1 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
11 Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI) Q9Y5K5 (/IPI)
(1 more)
Thiol-dependent ubiquitin-specific protease activity GO:0004843
Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
7 Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q9WUP7 (/ISS) Q9XSJ0 (/ISS)
Thiol-dependent ubiquitin-specific protease activity GO:0004843
Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
1 Q9WUP7 (/ISO)
Thiol-dependent ubiquitin-specific protease activity GO:0004843
Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
1 Q9WUP7 (/TAS)
Endopeptidase inhibitor activity GO:0004866
Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
1 Q9WUP7 (/ISO)
Thiol-dependent ubiquitinyl hydrolase activity GO:0036459
Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
1 Q9XSJ0 (/IDA)
Proteasome binding GO:0070628
Interacting selectively and non-covalently with a proteasome, a large multisubunit protein complex that catalyzes protein degradation.
1 Q9WUP7 (/ISO)

There are 15 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein deubiquitination GO:0016579
The removal of one or more ubiquitin groups from a protein.
12 Q9XZ61 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(2 more)
Protein deubiquitination GO:0016579
The removal of one or more ubiquitin groups from a protein.
11 Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS)
(1 more)
Negative regulation of proteasomal ubiquitin-dependent protein catabolic process GO:0032435
Any process that stops, prevents, or reduces the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
11 Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP)
(1 more)
Regulation of proteasomal protein catabolic process GO:0061136
Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
11 Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP) Q9Y5K5 (/IMP)
(1 more)
Protein deubiquitination GO:0016579
The removal of one or more ubiquitin groups from a protein.
7 Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q9WUP7 (/ISS) Q9XSJ0 (/ISS)
Cranial skeletal system development GO:1904888
The process whose specific outcome is the progression of a cranial skeletal system over time, from its formation to the mature structure. The cranial skeletal system is the skeletal subdivision of the head, and includes the skull (cranium plus mandible), pharyngeal and/or hyoid apparatus.
2 A0A2R8QDN8 (/IMP) Q6NWL6 (/IMP)
Circadian rhythm GO:0007623
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
1 Q9XZ61 (/TAS)
Toll signaling pathway GO:0008063
A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Toll on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
1 Q9XZ61 (/TAS)
Protein deubiquitination GO:0016579
The removal of one or more ubiquitin groups from a protein.
1 Q9WUP7 (/ISO)
Lateral ventricle development GO:0021670
The process whose specific outcome is the progression of the lateral ventricles over time, from the formation to the mature structure. The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle.
1 Q9WUP7 (/IMP)
Midbrain development GO:0030901
The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles).
1 Q9WUP7 (/IMP)
Negative regulation of proteasomal ubiquitin-dependent protein catabolic process GO:0032435
Any process that stops, prevents, or reduces the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
1 Q9WUP7 (/ISO)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
1 Q9XZ61 (/IC)
Forebrain morphogenesis GO:0048853
The process in which the anatomical structures of the forebrain are generated and organized. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).
1 Q9WUP7 (/IMP)
Regulation of proteasomal protein catabolic process GO:0061136
Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
1 Q9WUP7 (/ISO)

There are 20 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
18 Q5LJA5 (/IDA) Q5LJA5 (/IDA) Q5LJA5 (/IDA) Q5LJA9 (/IDA) Q5LJA9 (/IDA) Q5LJA9 (/IDA) Q5LJA9 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(8 more)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
18 Q5LJA5 (/IDA) Q5LJA5 (/IDA) Q5LJA5 (/IDA) Q5LJA9 (/IDA) Q5LJA9 (/IDA) Q5LJA9 (/IDA) Q5LJA9 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(8 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
13 Q9WUP7 (/TAS) Q9XZ61 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS)
(3 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
12 Q9XZ61 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS) Q9Y5K5 (/TAS)
(2 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
11 Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(1 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
11 Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(1 more)
Ino80 complex GO:0031011
A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
11 Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA) Q9Y5K5 (/IDA)
(1 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
7 Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q9WUP7 (/ISS) Q9XSJ0 (/ISS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
7 Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q06AT3 (/ISS) Q9WUP7 (/ISS) Q9XSJ0 (/ISS)
Proteasome complex GO:0000502
A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
1 Q9XZ61 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9XZ61 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9WUP7 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q9WUP7 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q9XZ61 (/HDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
1 Q9WUP7 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9WUP7 (/ISO)
Proteasome regulatory particle GO:0005838
A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.
1 Q9XZ61 (/IDA)
Ino80 complex GO:0031011
A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
1 Q9WUP7 (/ISO)
Cytosolic proteasome complex GO:0031597
A proteasome complex found in the cytosol of a cell.
1 Q5HZY3 (/IDA)
Cytosolic proteasome complex GO:0031597
A proteasome complex found in the cytosol of a cell.
1 Q9WUP7 (/ISO)