The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
P-loop containing nucleotide triphosphate hydrolases
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 280: Putative ras-related protein Rab-4B

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 20 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
66 P05714 (/IPI) P20338 (/IPI) P20338 (/IPI) P20338 (/IPI) P20338 (/IPI) P20338 (/IPI) P20338 (/IPI) P20338 (/IPI) P20338 (/IPI) P20338 (/IPI)
(56 more)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
21 P05714 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA)
(11 more)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
21 P05714 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA)
(11 more)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
20 P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS)
(10 more)
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
20 P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA)
(10 more)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
14 P05714 (/ISS) P56371 (/ISS) Q2TBH7 (/ISS) Q2TBH7 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS)
(4 more)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
4 P05714 (/ISS) P56371 (/ISS) Q2TBH7 (/ISS) Q2TBH7 (/ISS)
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
4 P05714 (/ISS) P56371 (/ISS) Q2TBH7 (/ISS) Q2TBH7 (/ISS)
ATPase activator activity GO:0001671
Binds to and increases the ATP hydrolysis activity of an ATPase.
1 P05714 (/IDA)
ATPase activator activity GO:0001671
Binds to and increases the ATP hydrolysis activity of an ATPase.
1 P56371 (/ISO)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
1 P56371 (/ISO)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
1 P56371 (/ISO)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
1 P05714 (/TAS)
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
1 P56371 (/ISO)
Syntaxin binding GO:0019905
Interacting selectively and non-covalently with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse.
1 P05714 (/IPI)
Syntaxin binding GO:0019905
Interacting selectively and non-covalently with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse.
1 P56371 (/ISO)
Ionotropic glutamate receptor binding GO:0035255
Interacting selectively and non-covalently with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels.
1 P05714 (/IPI)
Ionotropic glutamate receptor binding GO:0035255
Interacting selectively and non-covalently with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels.
1 P56371 (/ISO)
ATPase binding GO:0051117
Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
1 P05714 (/IDA)
ATPase binding GO:0051117
Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
1 P56371 (/ISO)

There are 17 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Neutrophil degranulation GO:0043312
The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
35 P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS)
(25 more)
Glucose import GO:0046323
The directed movement of the hexose monosaccharide glucose into a cell or organelle.
35 P61018 (/IMP) P61018 (/IMP) P61018 (/IMP) P61018 (/IMP) P61018 (/IMP) P61018 (/IMP) P61018 (/IMP) P61018 (/IMP) P61018 (/IMP) P61018 (/IMP)
(25 more)
Phosphatidylinositol biosynthetic process GO:0006661
The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
20 P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS)
(10 more)
Antigen processing and presentation GO:0019882
The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
20 P20338 (/IMP) P20338 (/IMP) P20338 (/IMP) P20338 (/IMP) P20338 (/IMP) P20338 (/IMP) P20338 (/IMP) P20338 (/IMP) P20338 (/IMP) P20338 (/IMP)
(10 more)
Endocytosis GO:0006897
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
10 Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS) Q7KY04 (/TAS)
Ovarian follicle cell-cell adhesion GO:0007299
The attachment of a somatic follicle cell to another somatic follicle cell or to its substratum, the germline cells. An example of this is found in Drosophila melanogaster.
10 Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP) Q7KY04 (/IMP)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
10 Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS)
Rab protein signal transduction GO:0032482
A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
10 Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS)
Glucose import GO:0046323
The directed movement of the hexose monosaccharide glucose into a cell or organelle.
3 Q91ZR1 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO)
Vasculature development GO:0001944
The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
2 Q6PHI9 (/IMP) Q6PHI9 (/IMP)
Small GTPase mediated signal transduction GO:0007264
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
1 P56371 (/IDA)
Protein transport GO:0015031
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
1 P56371 (/IDA)
Antigen processing and presentation GO:0019882
The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
1 P56371 (/ISO)
Regulation of endocytosis GO:0030100
Any process that modulates the frequency, rate or extent of endocytosis.
1 P56371 (/IDA)
Rab protein signal transduction GO:0032482
A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
1 P05714 (/IC)
Rab protein signal transduction GO:0032482
A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
1 P05714 (/IMP)
Rab protein signal transduction GO:0032482
A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
1 P56371 (/ISO)

There are 36 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
55 P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA)
(45 more)
Recycling endosome GO:0055037
An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
46 P05714 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA)
(36 more)
Insulin-responsive compartment GO:0032593
A small membrane-bounded vesicle that releases its contents by exocytosis in response to insulin stimulation; the contents are enriched in GLUT4, IRAP and VAMP2.
36 P05714 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA) P61018 (/IDA)
(26 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
35 P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS)
(25 more)
Secretory granule membrane GO:0030667
The lipid bilayer surrounding a secretory granule.
35 P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS) P61018 (/TAS)
(25 more)
Cytoplasmic vesicle membrane GO:0030659
The lipid bilayer surrounding a cytoplasmic vesicle.
21 P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS)
(11 more)
Early endosome membrane GO:0031901
The lipid bilayer surrounding an early endosome.
20 P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS) P20338 (/TAS)
(10 more)
Vesicle GO:0031982
Any small, fluid-filled, spherical organelle enclosed by membrane.
20 P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA)
(10 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
20 P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA) P20338 (/IDA)
(10 more)
Endosome GO:0005768
A vacuole to which materials ingested by endocytosis are delivered.
11 P56371 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA)
(1 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
10 Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA)
Vesicle GO:0031982
Any small, fluid-filled, spherical organelle enclosed by membrane.
10 Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS) Q7KY04 (/ISS)
Neuronal cell body GO:0043025
The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
10 Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
10 Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA) Q7KY04 (/HDA)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
10 Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA) Q7KY04 (/IDA)
Insulin-responsive compartment GO:0032593
A small membrane-bounded vesicle that releases its contents by exocytosis in response to insulin stimulation; the contents are enriched in GLUT4, IRAP and VAMP2.
4 P56371 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO)
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
4 P56371 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO)
Recycling endosome GO:0055037
An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
4 P56371 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO)
Anchored component of synaptic vesicle membrane GO:0098993
The component of the synaptic vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
4 P05714 (/IDA) P51146 (/IDA) P51146 (/IDA) P51146 (/IDA)
Anchored component of synaptic vesicle membrane GO:0098993
The component of the synaptic vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
4 P56371 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO) Q91ZR1 (/ISO)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
3 Q91ZR1 (/HDA) Q91ZR1 (/HDA) Q91ZR1 (/HDA)
Anchored component of synaptic vesicle membrane GO:0098993
The component of the synaptic vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
3 P51146 (/EXP) P51146 (/EXP) P51146 (/EXP)
Anchored component of synaptic vesicle membrane GO:0098993
The component of the synaptic vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
3 P51146 (/IMP) P51146 (/IMP) P51146 (/IMP)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 P56371 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 P05714 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 P56371 (/ISO)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
1 P05714 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
1 P56371 (/ISO)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
1 P05714 (/IDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
1 P56371 (/ISO)
Vesicle GO:0031982
Any small, fluid-filled, spherical organelle enclosed by membrane.
1 P56371 (/ISO)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
1 P05714 (/IDA)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
1 P56371 (/ISO)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
1 P56371 (/ISO)
Postsynaptic recycling endosome GO:0098837
A recycling endosome of the postsynapse. In postsynaptic terminals with dendritic spines, it is typically located at the base of a dendritic spine. It is involved in recycling of neurotransmitter receptors to the postsynaptic membrane. In some cases at least, this recycling is activated by postsynaptic signalling and so can play a role in long term potentiation.
1 P05714 (/IDA)
Postsynaptic recycling endosome GO:0098837
A recycling endosome of the postsynapse. In postsynaptic terminals with dendritic spines, it is typically located at the base of a dendritic spine. It is involved in recycling of neurotransmitter receptors to the postsynaptic membrane. In some cases at least, this recycling is activated by postsynaptic signalling and so can play a role in long term potentiation.
1 P56371 (/ISO)