The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
P-loop containing nucleotide triphosphate hydrolases
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 111: DEAD-box ATP-dependent RNA helicase

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 28 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
61 O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI)
(51 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
48 O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA)
(38 more)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
48 O00148 (/EXP) O00148 (/EXP) O00148 (/EXP) O00148 (/EXP) O00148 (/EXP) O00148 (/EXP) O00148 (/EXP) O00148 (/EXP) O00148 (/EXP) O00148 (/EXP)
(38 more)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
48 O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI) O00148 (/IPI)
(38 more)
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
37 F4JWF6 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(27 more)
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
33 Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS) Q13838 (/TAS)
(23 more)
RNA-dependent ATPase activity GO:0008186
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
U6 snRNA binding GO:0017070
Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA).
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
U4 snRNA binding GO:0030621
Interacting selectively and non-covalently with the U4 small nuclear RNA (U4 snRNA).
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
ATP-dependent protein binding GO:0043008
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of ATP.
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
15 Q07478 (/IDA) Q07478 (/IDA) Q07478 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA)
(5 more)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
4 F4JWF6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA)
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
4 F4JWF6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA)
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
4 O13792 (/IGI) Q07478 (/IGI) Q07478 (/IGI) Q07478 (/IGI)
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
4 Q27268 (/ISS) Q27268 (/ISS) Q27268 (/ISS) Q55CR6 (/ISS)
Double-stranded RNA binding GO:0003725
Interacting selectively and non-covalently with double-stranded RNA.
4 F4JWF6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
4 F4JWF6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA)
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
3 Q07478 (/ISA) Q07478 (/ISA) Q07478 (/ISA)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
3 Q8VDW0 (/ISO) Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
3 Q8VDW0 (/ISO) Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
RNA-dependent ATPase activity GO:0008186
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
U6 snRNA binding GO:0017070
Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA).
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
U4 snRNA binding GO:0030621
Interacting selectively and non-covalently with the U4 small nuclear RNA (U4 snRNA).
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
ATP-dependent protein binding GO:0043008
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) using energy from the hydrolysis of ATP.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
2 Q63413 (/IDA) Q63413 (/IDA)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
1 Q18212 (/IPI)

There are 48 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Positive regulation of DNA-templated transcription, elongation GO:0032786
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
142 P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS)
(132 more)
Negative regulation of DNA damage checkpoint GO:2000002
Any process that stops, prevents, or reduces the frequency, rate or extent of a DNA damage checkpoint.
142 P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS) P60024 (/ISS)
(132 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
48 O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI)
(38 more)
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
48 O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS)
(38 more)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
48 O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI) O00148 (/IGI)
(38 more)
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
48 O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS)
(38 more)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
36 Q07478 (/IDA) Q07478 (/IDA) Q07478 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(26 more)
Spliceosomal complex assembly GO:0000245
The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
RNA secondary structure unwinding GO:0010501
The process in which a secondary structure of RNA are broken or 'melted'.
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
Positive regulation of DNA-templated transcription, elongation GO:0032786
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
33 Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP)
(23 more)
Viral mRNA export from host cell nucleus GO:0046784
The directed movement of intronless viral mRNA from the host nucleus to the cytoplasm for translation.
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
Negative regulation of DNA damage checkpoint GO:2000002
Any process that stops, prevents, or reduces the frequency, rate or extent of a DNA damage checkpoint.
33 Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP) Q13838 (/IMP)
(23 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
6 Q27268 (/ISS) Q27268 (/ISS) Q27268 (/ISS) Q3T147 (/ISS) Q3T147 (/ISS) Q55CR6 (/ISS)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
6 Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP) Q27268 (/IMP) Q27268 (/IMP) Q27268 (/IMP)
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
3 Q27268 (/HMP) Q27268 (/HMP) Q27268 (/HMP)
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
3 Q27268 (/IMP) Q27268 (/IMP) Q27268 (/IMP)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
3 Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
3 Q8VDW0 (/ISO) Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Transcription-coupled nucleotide-excision repair GO:0006283
The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
3 Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
3 Q27268 (/IMP) Q27268 (/IMP) Q27268 (/IMP)
Chromatin silencing at telomere GO:0006348
Repression of transcription of telomeric DNA by altering the structure of chromatin.
3 Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP)
Transcription elongation from RNA polymerase II promoter GO:0006368
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
3 Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
3 Q07478 (/IPI) Q07478 (/IPI) Q07478 (/IPI)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
3 Q8VDW0 (/ISO) Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Pollen development GO:0009555
The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
3 Q0JM17 (/IMP) Q5JK84 (/IMP) Q5JK84 (/IMP)
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
3 Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP)
Response to cadmium ion GO:0046686
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
3 Q56XG6 (/IEP) Q56XG6 (/IEP) Q56XG6 (/IEP)
Anther development GO:0048653
The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure.
3 Q0JM17 (/IMP) Q5JK84 (/IMP) Q5JK84 (/IMP)
Spliceosomal complex assembly GO:0000245
The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Liver development GO:0001889
The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
2 Q63413 (/IEP) Q63413 (/IEP)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
2 Q3T147 (/ISS) Q3T147 (/ISS)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
RNA secondary structure unwinding GO:0010501
The process in which a secondary structure of RNA are broken or 'melted'.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Positive regulation of DNA-templated transcription, elongation GO:0032786
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
2 Q63413 (/IMP) Q63413 (/IMP)
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Viral mRNA export from host cell nucleus GO:0046784
The directed movement of intronless viral mRNA from the host nucleus to the cytoplasm for translation.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Positive regulation of cell growth involved in cardiac muscle cell development GO:0061051
Any process that increases the rate, frequency, or extent of the growth of a cardiac muscle cell, where growth contributes to the progression of the cell over time from its initial formation to its mature state.
2 Q63413 (/IMP) Q63413 (/IMP)
Positive regulation of cell growth involved in cardiac muscle cell development GO:0061051
Any process that increases the rate, frequency, or extent of the growth of a cardiac muscle cell, where growth contributes to the progression of the cell over time from its initial formation to its mature state.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Positive regulation of vascular smooth muscle cell proliferation GO:1904707
Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell proliferation.
2 Q63413 (/IMP) Q63413 (/IMP)
Positive regulation of vascular smooth muscle cell proliferation GO:1904707
Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell proliferation.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Negative regulation of DNA damage checkpoint GO:2000002
Any process that stops, prevents, or reduces the frequency, rate or extent of a DNA damage checkpoint.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Positive regulation of DNA biosynthetic process GO:2000573
Any process that activates or increases the frequency, rate or extent of DNA biosynthetic process.
2 Q63413 (/IMP) Q63413 (/IMP)
Positive regulation of DNA biosynthetic process GO:2000573
Any process that activates or increases the frequency, rate or extent of DNA biosynthetic process.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Determination of adult lifespan GO:0008340
The control of viability and duration in the adult phase of the life-cycle.
1 Q18212 (/IGI)
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
1 Q18212 (/IGI)
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
1 O13792 (/ISO)

There are 28 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
85 A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA) A0A024RCM3 (/IDA)
(75 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
72 F4JWF6 (/IDA) O00148 (/IDA) O00148 (/IDA) O00148 (/IDA) O00148 (/IDA) O00148 (/IDA) O00148 (/IDA) O00148 (/IDA) O00148 (/IDA) O00148 (/IDA)
(62 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
48 O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS)
(38 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
48 O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS) O00148 (/TAS)
(38 more)
Transcription export complex GO:0000346
The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans.
36 Q07478 (/IDA) Q07478 (/IDA) Q07478 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(26 more)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
33 Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA) Q13838 (/IDA)
(23 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
15 O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA) O00148 (/HDA)
(5 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
12 Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA) Q9TY94 (/IDA)
(2 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 O13792 (/HDA) Q07478 (/HDA) Q07478 (/HDA) Q07478 (/HDA)
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
4 F4JWF6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA)
Transcription export complex GO:0000346
The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans.
3 O13792 (/ISO) Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Transcription export complex GO:0000346
The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans.
3 Q27268 (/ISS) Q27268 (/ISS) Q27268 (/ISS)
Chromosome, telomeric region GO:0000781
The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins.
3 Q07478 (/IDA) Q07478 (/IDA) Q07478 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 Q27268 (/IC) Q27268 (/IC) Q27268 (/IC)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 Q8VDW0 (/ISO) Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
3 Q27268 (/ISS) Q27268 (/ISS) Q27268 (/ISS)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
3 Q07478 (/TAS) Q07478 (/TAS) Q07478 (/TAS)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
3 Q56XG6 (/IDA) Q56XG6 (/IDA) Q56XG6 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 Q07478 (/HDA) Q07478 (/HDA) Q07478 (/HDA)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
3 Q8VDW0 (/ISO) Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Nuclear matrix GO:0016363
The dense fibrillar network lying on the inner side of the nuclear membrane.
2 Q63413 (/IDA) Q63413 (/IDA)
Nuclear matrix GO:0016363
The dense fibrillar network lying on the inner side of the nuclear membrane.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
2 Q63413 (/IDA) Q63413 (/IDA)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
2 Q9Z1N5 (/ISO) Q9Z1N5 (/ISO)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
1 F4JWF6 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q55CR6 (/ISS)
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
1 Q18212 (/IPI)