The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 520: Polyadenylate-binding protein
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
7 | P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
7 | P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) |
|
Poly(A) binding GO:0008143
Interacting selectively and non-covalently with a sequence of adenylyl residues in an RNA molecule, such as the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Poly(A) binding GO:0008143
Interacting selectively and non-covalently with a sequence of adenylyl residues in an RNA molecule, such as the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA.
|
7 | P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) |
|
Ribonuclease inhibitor activity GO:0008428
Stops, prevents or reduces the activity of a ribonuclease, any enzyme that catalyzes the hydrolysis of phosphodiester bonds in chains of RNA.
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7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Protein kinase A catalytic subunit binding GO:0034236
Interacting selectively and non-covalently with one or both of the catalytic subunits of protein kinase A.
|
7 | P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) P04147 (/IPI) |
|
Promoter-specific chromatin binding GO:1990841
Interacting selectively and non-covalently with a section of chromatin that is associated with gene promoter sequences of DNA.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Poly(A) binding GO:0008143
Interacting selectively and non-covalently with a sequence of adenylyl residues in an RNA molecule, such as the poly(A) tail, a sequence of adenylyl residues at the 3' end of eukaryotic mRNA.
|
1 | Q54BM2 (/ISS) |
There are 4 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of translational initiation GO:0006446
Any process that modulates the frequency, rate or extent of translational initiation.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Regulation of translational initiation GO:0006446
Any process that modulates the frequency, rate or extent of translational initiation.
|
7 | P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) |
|
Regulation of nuclear-transcribed mRNA poly(A) tail shortening GO:0060211
Any process that modulates the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Regulation of nuclear-transcribed mRNA poly(A) tail shortening GO:0060211
Any process that modulates the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.
|
7 | P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) P04147 (/IMP) |
There are 8 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
7 | P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) P04147 (/HDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Cytoplasmic stress granule GO:0010494
A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress.
|
7 | P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) P04147 (/IDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q54BM2 (/ISS) |
|
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
|
1 | Q54BM2 (/HDA) |