The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 135: RNA-binding protein 39 isoform X2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 4 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
48 |
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
Q14498 (/IPI)
(38 more) |
|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
47 |
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
Q14498 (/HDA)
(37 more) |
|
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
1 | Q8VH51 (/TAS) |
|
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
1 | Q9VM49 (/ISS) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
RNA processing GO:0006396
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
|
47 |
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
(37 more) |
|
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
1 | Q9VM49 (/HMP) |
|
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
1 | Q9VM49 (/IMP) |
|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
1 | Q9VM49 (/IC) |
|
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
1 | Q8VH51 (/TAS) |
There are 17 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
47 |
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
(37 more) |
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
47 |
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
Q14498 (/TAS)
(37 more) |
|
Microtubule organizing center GO:0005815
An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
|
47 |
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
(37 more) |
|
Microtubule cytoskeleton GO:0015630
The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
|
47 |
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
(37 more) |
|
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
47 |
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
Q14498 (/IDA)
(37 more) |
|
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
47 |
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
(37 more) |
|
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
47 |
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
Q14498 (/IMP)
(37 more) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q9VM49 (/IC) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q8VH51 (/TAS) |
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q9VM49 (/HDA) |
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q8VH51 (/ISO) |
|
Microtubule organizing center GO:0005815
An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
|
1 | Q8VH51 (/ISO) |
|
Microtubule cytoskeleton GO:0015630
The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
|
1 | Q8VH51 (/ISO) |
|
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
1 | Q8VH51 (/ISO) |
|
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
1 | Q8VH51 (/ISO) |
|
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
|
1 | Q9VM49 (/HDA) |
|
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
|
1 | Q9VM49 (/HDA) |