The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 4: AP complex subunit sigma

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
106 P53680 (/IPI) P53680 (/IPI) P53680 (/IPI) P53680 (/IPI) P53680 (/IPI) P53680 (/IPI) P53680 (/IPI) P53680 (/IPI) P53680 (/IPI) P53680 (/IPI)
(96 more)
Clathrin adaptor activity GO:0035615
Bringing together a cargo protein with clathrin, responsible for the formation of endocytic vesicles.
16 Q9GQM7 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP)
(6 more)
Clathrin binding GO:0030276
Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
8 Q19123 (/ISS) Q19123 (/ISS) Q19123 (/ISS) Q19123 (/ISS) Q19123 (/ISS) Q19123 (/ISS) Q19123 (/ISS) Q19123 (/ISS)

There are 16 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0019886
The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Regulation of endocytosis GO:0030100
Any process that modulates the frequency, rate or extent of endocytosis.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Low-density lipoprotein particle receptor catabolic process GO:0032802
The chemical reactions and pathways resulting in the breakdown of a low-density lipoprotein particle receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Low-density lipoprotein particle clearance GO:0034383
The process in which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Ephrin receptor signaling pathway GO:0048013
The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Clathrin coat assembly GO:0048268
The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Regulation of defense response to virus by virus GO:0050690
Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Wnt signaling pathway, planar cell polarity pathway GO:0060071
The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Membrane organization GO:0061024
A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Clathrin-dependent endocytosis GO:0072583
An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Habituation GO:0046959
A decrease in a behavioral response to a repeated stimulus. This is exemplified by the failure of a person to show a startle response to a loud noise that has been repeatedly presented.
22 Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP) Q6PEJ2 (/IMP)
(12 more)
Endocytosis GO:0006897
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
16 Q9GQM7 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP)
(6 more)
Nematode larval development GO:0002119
The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew.
8 Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP)
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
8 Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP)
Body morphogenesis GO:0010171
The process in which the anatomical structures of the soma are generated and organized.
8 Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP)
Clathrin-dependent endocytosis GO:0072583
An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles.
8 Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP) Q19123 (/IMP)

There are 10 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
106 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(96 more)
AP-2 adaptor complex GO:0030122
A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC).
106 P62743 (/IDA) P62743 (/IDA) P62743 (/IDA) P62743 (/IDA) P62743 (/IDA) P62743 (/IDA) P62743 (/IDA) P62743 (/IDA) P62743 (/IDA) P62743 (/IDA)
(96 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
AP-2 adaptor complex GO:0030122
A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC).
53 P62743 (/ISO) P62743 (/ISO) P62743 (/ISO) P62743 (/ISO) P62743 (/ISO) P62743 (/ISO) P62743 (/ISO) P62743 (/ISO) P62743 (/ISO) P62743 (/ISO)
(43 more)
AP-2 adaptor complex GO:0030122
A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC).
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Endocytic vesicle membrane GO:0030666
The lipid bilayer surrounding an endocytic vesicle.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Clathrin-coated endocytic vesicle membrane GO:0030669
The lipid bilayer surrounding a clathrin-coated endocytic vesicle.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Endolysosome membrane GO:0036020
The lipid bilayer surrounding an endolysosome. An endolysosome is a transient hybrid organelle formed by fusion of a late endosome with a lysosome.
53 P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS) P53680 (/TAS)
(43 more)
Clathrin-coated endocytic vesicle GO:0045334
A clathrin-coated, membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance.
53 P53680 (/NAS) P53680 (/NAS) P53680 (/NAS) P53680 (/NAS) P53680 (/NAS) P53680 (/NAS) P53680 (/NAS) P53680 (/NAS) P53680 (/NAS) P53680 (/NAS)
(43 more)
AP-2 adaptor complex GO:0030122
A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC).
16 Q9GQM7 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP) Q9VDC3 (/IMP)
(6 more)