The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 3: Transcription elongation factor SPT4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
11 P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI)
(1 more)
RDNA binding GO:0000182
Interacting selectively and non-covalently with DNA sequences encoding ribosomal RNA.
10 P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA)
RNA polymerase II complex binding GO:0000993
Interacting selectively and non-covalently with RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
10 P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA)
RNA polymerase I general transcription initiation factor activity GO:0001181
An activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase I. Factors required for RNA polymerase I transcription initiation include upstream activation factor (UAF), core factor (CF), TATA binding protein (TBP) and RRN3.
10 P32914 (/IC) P32914 (/IC) P32914 (/IC) P32914 (/IC) P32914 (/IC) P32914 (/IC) P32914 (/IC) P32914 (/IC) P32914 (/IC) P32914 (/IC)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
10 P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA)
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
1 Q9P7K8 (/ISO)

There are 14 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Chromatin silencing GO:0006342
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
7-methylguanosine mRNA capping GO:0006370
Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
10 P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI)
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Intracellular mRNA localization GO:0008298
Any process in which mRNA is transported to, or maintained in, a specific location within the cell.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
10 P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Regulation of transcription-coupled nucleotide-excision repair GO:0090262
Any process that modulates the frequency, rate, or extent of the nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
10 P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI)
Regulation of rRNA processing GO:2000232
Any process that modulates the frequency, rate or extent of rRNA processing.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Negative regulation of transcription elongation by RNA polymerase I GO:2001208
Any process that stops, prevents or reduces the frequency, rate or extent of transcription elongation mediated by RNA polymerase I.
10 P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI) P32914 (/IGI)
Positive regulation of transcription elongation from RNA polymerase I promoter GO:2001209
Any process that activates or increases the frequency, rate or extent of transcription elongation from RNA polymerase I promoter.
10 P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP) P32914 (/IMP)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
1 Q9P7K8 (/IGI)

There are 6 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Kinetochore GO:0000776
A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
10 P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA) P32914 (/IDA)
DSIF complex GO:0032044
A heterodimeric protein complex formed of Spt4 and Spt5 proteins which is expressed in eukaryotes from yeast to man. DSIF is an inhibitory elongation factor that promotes RNA polymerase II transcriptional pausing, but can also stimulate transcriptional elongation under certain conditions, and may play a role in RNA processing via its physical association with mRNA capping enzymes.
10 P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI) P32914 (/IPI)
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
1 Q9P7K8 (/IC)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9P7K8 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9P7K8 (/HDA)
DSIF complex GO:0032044
A heterodimeric protein complex formed of Spt4 and Spt5 proteins which is expressed in eukaryotes from yeast to man. DSIF is an inhibitory elongation factor that promotes RNA polymerase II transcriptional pausing, but can also stimulate transcriptional elongation under certain conditions, and may play a role in RNA processing via its physical association with mRNA capping enzymes.
1 Q9P7K8 (/IDA)