The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Classic Zinc Finger
".
FunFam 9: zinc finger protein 79 isoform X2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
49 |
O14978 (/ISA)
O14978 (/ISA)
O14978 (/ISA)
O14978 (/ISA)
P13682 (/ISA)
P13682 (/ISA)
P13682 (/ISA)
P52741 (/ISA)
P58317 (/ISA)
P58317 (/ISA)
(39 more) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
O14978 (/IPI)
O14978 (/IPI)
O14978 (/IPI)
O14978 (/IPI)
Q09FC8 (/IPI)
Q09FC8 (/IPI)
Q15937 (/IPI)
Q15937 (/IPI)
Q15937 (/IPI)
Q15937 (/IPI)
(7 more) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
15 |
E9PXW0 (/ISO)
E9PXW0 (/ISO)
E9PXW0 (/ISO)
G3X9I0 (/ISO)
G3X9I0 (/ISO)
G3X9I0 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
Q3UHV1 (/ISO)
(5 more) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
12 |
G3X9I0 (/ISO)
G3X9I0 (/ISO)
G3X9I0 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
Q3UHV1 (/ISO)
Q3UHV1 (/ISO)
Q3UHV1 (/ISO)
Q80WR2 (/ISO)
(2 more) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
7 | O14978 (/IDA) O14978 (/IDA) O14978 (/IDA) O14978 (/IDA) P13682 (/IDA) P13682 (/IDA) P13682 (/IDA) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
6 | O88412 (/ISS) O88412 (/ISS) O88412 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
6 | O88412 (/ISS) O88412 (/ISS) O88412 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) |
|
DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to repress or decrease transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
4 | O14978 (/IC) O14978 (/IC) O14978 (/IC) O14978 (/IC) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
4 | O14978 (/TAS) O14978 (/TAS) O14978 (/TAS) O14978 (/TAS) |
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
3 | P13682 (/NAS) P13682 (/NAS) P13682 (/NAS) |
|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
3 | P13682 (/TAS) P13682 (/TAS) P13682 (/TAS) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
3 | P13682 (/IDA) P13682 (/IDA) P13682 (/IDA) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
1 | P52741 (/NAS) |
There are 12 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
7 | O14978 (/TAS) O14978 (/TAS) O14978 (/TAS) O14978 (/TAS) P13682 (/TAS) P13682 (/TAS) P13682 (/TAS) |
|
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
6 | P13682 (/ISS) P13682 (/ISS) P13682 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) |
|
Positive regulation of apoptotic process GO:0043065
Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
|
6 | E9Q5X9 (/IDA) E9Q5X9 (/IDA) E9Q5X9 (/IDA) Q9D5K8 (/IDA) Q9D5K8 (/IDA) Q9D5K8 (/IDA) |
|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
6 | E9Q5X9 (/IDA) E9Q5X9 (/IDA) E9Q5X9 (/IDA) Q9D5K8 (/IDA) Q9D5K8 (/IDA) Q9D5K8 (/IDA) |
|
Cellular response to retinoic acid GO:0071300
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
|
6 | P13682 (/ISS) P13682 (/ISS) P13682 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) |
|
Blastocyst hatching GO:0001835
The hatching of the cellular blastocyst from the zona pellucida.
|
5 | Q8BLE1 (/IMP) Q8BLE1 (/IMP) Q8BLE1 (/IMP) Q8BLE1 (/IMP) Q8BLE1 (/IMP) |
|
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
4 | O14978 (/IDA) O14978 (/IDA) O14978 (/IDA) O14978 (/IDA) |
|
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
3 | E9PXW0 (/ISO) E9PXW0 (/ISO) E9PXW0 (/ISO) |
|
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
3 | O88412 (/IEP) O88412 (/IEP) O88412 (/IEP) |
|
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
3 | O88412 (/IMP) O88412 (/IMP) O88412 (/IMP) |
|
Cellular response to retinoic acid GO:0071300
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
|
3 | O88412 (/IEP) O88412 (/IEP) O88412 (/IEP) |
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | P52741 (/NAS) |
There are 12 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
12 |
G3X9I0 (/ISO)
G3X9I0 (/ISO)
G3X9I0 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
Q3UHV1 (/ISO)
Q3UHV1 (/ISO)
Q3UHV1 (/ISO)
Q80WR2 (/ISO)
(2 more) |
|
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
|
12 |
G3X9I0 (/ISO)
G3X9I0 (/ISO)
G3X9I0 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
O88412 (/ISO)
Q3UHV1 (/ISO)
Q3UHV1 (/ISO)
Q3UHV1 (/ISO)
Q80WR2 (/ISO)
(2 more) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | E9Q5X9 (/IDA) E9Q5X9 (/IDA) E9Q5X9 (/IDA) P13682 (/IDA) P13682 (/IDA) P13682 (/IDA) Q9D5K8 (/IDA) Q9D5K8 (/IDA) Q9D5K8 (/IDA) |
|
Cell GO:0005623
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
|
6 | P13682 (/ISS) P13682 (/ISS) P13682 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | O88412 (/ISS) O88412 (/ISS) O88412 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) |
|
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
|
6 | O88412 (/ISS) O88412 (/ISS) O88412 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) Q5M881 (/ISS) |
|
Cell GO:0005623
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
|
3 | O88412 (/IDA) O88412 (/IDA) O88412 (/IDA) |
|
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
|
3 | P13682 (/IDA) P13682 (/IDA) P13682 (/IDA) |
|
Fibrillar center GO:0001650
A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.
|
2 | Q09FC8 (/IDA) Q09FC8 (/IDA) |
|
Microtubule cytoskeleton GO:0015630
The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
|
2 | Q09FC8 (/IDA) Q09FC8 (/IDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | P52741 (/NAS) |
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q99LH4 (/ISO) |