The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Classic Zinc Finger
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 619: juxtaposed with another zinc finger protein 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
28 Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS) Q86VZ6 (/NAS)
(18 more)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
28 Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA)
(18 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
28 Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI) Q86VZ6 (/IPI)
(18 more)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
3 Q80ZQ5 (/ISO) Q80ZQ5 (/ISO) Q80ZQ5 (/ISO)

There are 5 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
28 Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA)
(18 more)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
3 Q80ZQ5 (/ISO) Q80ZQ5 (/ISO) Q80ZQ5 (/ISO)
Determination of left/right symmetry GO:0007368
The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry.
2 Q49TU3 (/IMP) Q5PR25 (/IMP)
Cilium assembly GO:0060271
The assembly of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.
2 Q49TU3 (/IMP) Q5PR25 (/IMP)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
1 Q9V9Z6 (/ISS)

There are 9 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Fibrillar center GO:0001650
A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.
28 Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA)
(18 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
28 Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA)
(18 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
28 Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA)
(18 more)
Transcriptional repressor complex GO:0017053
A protein complex that possesses activity that prevents or downregulates transcription.
28 Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA) Q86VZ6 (/IDA)
(18 more)
Fibrillar center GO:0001650
A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.
3 Q80ZQ5 (/ISO) Q80ZQ5 (/ISO) Q80ZQ5 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 Q80ZQ5 (/ISO) Q80ZQ5 (/ISO) Q80ZQ5 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
3 Q80ZQ5 (/ISO) Q80ZQ5 (/ISO) Q80ZQ5 (/ISO)
Transcriptional repressor complex GO:0017053
A protein complex that possesses activity that prevents or downregulates transcription.
3 Q80ZQ5 (/ISO) Q80ZQ5 (/ISO) Q80ZQ5 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9V9Z6 (/ISS)