The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: 40S ribosomal protein S2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 17 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
22 P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P49688 (/IDA) Q8IL02 (/IDA)
(12 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
13 P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P49688 (/IDA)
(3 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
11 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P31009 (/HDA)
(1 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
11 O74892 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI)
(1 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
9 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA)
Fibroblast growth factor binding GO:0017134
Interacting selectively and non-covalently with a fibroblast growth factor.
9 P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI)
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
9 P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI) P15880 (/IPI)
Cadherin binding GO:0045296
Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
9 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA)
Small ribosomal subunit rRNA binding GO:0070181
Interacting selectively and non-covalently with the small ribosomal subunit RNA (SSU rRNA), a constituent of the small ribosomal subunit. In S. cerevisiae, this is the 18S rRNA.
8 P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
4 O74892 (/ISO) P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
3 P27952 (/IMP) P27952 (/IMP) P27952 (/IMP)
Fibroblast growth factor binding GO:0017134
Interacting selectively and non-covalently with a fibroblast growth factor.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
3 P27952 (/IMP) P27952 (/IMP) P27952 (/IMP)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
2 P31009 (/TAS) P31009 (/TAS)

There are 21 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
9 P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
9 P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
9 P15880 (/IC) P15880 (/IC) P15880 (/IC) P15880 (/IC) P15880 (/IC) P15880 (/IC) P15880 (/IC) P15880 (/IC) P15880 (/IC)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
9 P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
9 P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
9 P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS)
Positive regulation of ubiquitin-protein transferase activity GO:0051443
Any process that activates, maintains or increases the rate of ubiquitin transferase activity.
9 P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA)
RRNA export from nucleus GO:0006407
The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins.
8 P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP)
RRNA methylation GO:0031167
The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.
8 P25443 (/TAS) P25443 (/TAS) P25443 (/TAS) P25443 (/TAS) P25443 (/TAS) P25443 (/TAS) P25443 (/TAS) P25443 (/TAS)
Positive regulation of translational fidelity GO:0045903
Any process that increases the ability of the translational apparatus to interpret the genetic code.
8 P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP) P25443 (/IMP)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
7 Q8IL02 (/ISS) Q8IL02 (/ISS) Q8IL02 (/ISS) Q8IL02 (/ISS) Q8IL02 (/ISS) Q8IL02 (/ISS) Q8IL02 (/ISS)
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
3 P27952 (/IMP) P27952 (/IMP) P27952 (/IMP)
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Formation of translation preinitiation complex GO:0001731
The joining of the small ribosomal subunit, ternary complex, and mRNA.
3 P27952 (/IMP) P27952 (/IMP) P27952 (/IMP)
Formation of translation preinitiation complex GO:0001731
The joining of the small ribosomal subunit, ternary complex, and mRNA.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Response to ethanol GO:0045471
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
3 P27952 (/IEP) P27952 (/IEP) P27952 (/IEP)
Positive regulation of ubiquitin-protein transferase activity GO:0051443
Any process that activates, maintains or increases the rate of ubiquitin transferase activity.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Cellular response to interleukin-4 GO:0071353
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-4 stimulus.
3 P25444 (/IDA) P25444 (/IDA) P25444 (/IDA)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
2 P31009 (/IC) P31009 (/IC)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
2 P31009 (/TAS) P31009 (/TAS)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
1 O74892 (/ISO)

There are 31 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
34 P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P25443 (/IDA)
(24 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
17 P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P25443 (/TAS)
(7 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
9 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
9 P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA) P15880 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
9 P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS) P15880 (/TAS)
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
9 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
9 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
9 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
9 P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA) P15880 (/HDA)
Small-subunit processome GO:0032040
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
8 P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA) P25443 (/IDA)
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
7 P49688 (/IDA) Q8L8Y0 (/IDA) Q8L8Y0 (/IDA) Q93VB8 (/IDA) Q93VB8 (/IDA) Q93VB8 (/IDA) Q9SCM3 (/IDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
7 P49688 (/IDA) Q8L8Y0 (/IDA) Q8L8Y0 (/IDA) Q93VB8 (/IDA) Q93VB8 (/IDA) Q93VB8 (/IDA) Q9SCM3 (/IDA)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
4 O74892 (/ISO) P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
3 Q93VB8 (/IDA) Q93VB8 (/IDA) Q93VB8 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
3 P31009 (/IDA) P31009 (/IDA) P49688 (/IDA)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
3 P25444 (/EXP) P25444 (/EXP) P25444 (/EXP)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
3 P25444 (/IDA) P25444 (/IDA) P25444 (/IDA)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
3 P27952 (/IDA) P27952 (/IDA) P27952 (/IDA)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
3 P25444 (/ISO) P25444 (/ISO) P25444 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
2 P31009 (/IDA) P31009 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
2 Q8L8Y0 (/IDA) Q8L8Y0 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
2 Q8L8Y0 (/IDA) Q8L8Y0 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
2 P31009 (/HDA) P31009 (/HDA)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
2 P31009 (/TAS) P31009 (/TAS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 O74892 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 P49688 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
1 P49688 (/IDA)
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
1 P27685 (/HDA)
Small-subunit processome GO:0032040
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
1 O74892 (/ISO)
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
1 P49688 (/IDA)