The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
RNA-binding S4 domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: 40S ribosomal protein S4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 15 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
50 P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO)
(40 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
49 P22090 (/IMP) P22090 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP)
(39 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
49 P49204 (/IPI) P49204 (/IPI) P62701 (/IPI) P62701 (/IPI) P62701 (/IPI) P62701 (/IPI) P62701 (/IPI) P62701 (/IPI) P62701 (/IPI) P62701 (/IPI)
(39 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
47 P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA)
(37 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
19 P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX36 (/IDA) P0CX36 (/IDA)
(9 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
6 P22090 (/TAS) P22090 (/TAS) P41042 (/TAS) P41042 (/TAS) P41042 (/TAS) P41042 (/TAS)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
5 P49204 (/IDA) P49204 (/IDA) Q386F2 (/IDA) Q386F2 (/IDA) Q386F2 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
4 P41042 (/HDA) P41042 (/HDA) P41042 (/HDA) P41042 (/HDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
3 Q386F2 (/ISM) Q386F2 (/ISM) Q386F2 (/ISM)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
3 Q386F2 (/ISM) Q386F2 (/ISM) Q386F2 (/ISM)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
3 Q386F2 (/IPI) Q386F2 (/IPI) Q386F2 (/IPI)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
2 P22090 (/TAS) P22090 (/TAS)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
2 P46299 (/TAS) P46299 (/TAS)
Translation initiation factor binding GO:0031369
Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation.
2 P46299 (/TAS) P46299 (/TAS)
Inositol hexakisphosphate binding GO:0000822
Interacting selectively and non-covalently with inositol hexakisphosphate.
1 P51405 (/IDA)

There are 20 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
49 P22090 (/TAS) P22090 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS)
(39 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
49 P22090 (/IMP) P22090 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP)
(39 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
49 P22090 (/TAS) P22090 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS)
(39 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
49 P22090 (/TAS) P22090 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS)
(39 more)
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
49 P22090 (/IMP) P22090 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP)
(39 more)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
49 P22090 (/TAS) P22090 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS)
(39 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
47 P62701 (/IC) P62701 (/IC) P62701 (/IC) P62701 (/IC) P62701 (/IC) P62701 (/IC) P62701 (/IC) P62701 (/IC) P62701 (/IC) P62701 (/IC)
(37 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
47 P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO)
(37 more)
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
47 P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO)
(37 more)
Positive regulation of cell population proliferation GO:0008284
Any process that activates or increases the rate or extent of cell proliferation.
47 P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP)
(37 more)
Response to ethanol GO:0045471
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
47 P62703 (/IEP) P62703 (/IEP) P62703 (/IEP) P62703 (/IEP) P62703 (/IEP) P62703 (/IEP) P62703 (/IEP) P62703 (/IEP) P62703 (/IEP) P62703 (/IEP)
(37 more)
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
47 P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP) P62701 (/IMP)
(37 more)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
20 P0CX35 (/IC) P0CX35 (/IC) P0CX35 (/IC) P0CX35 (/IC) P0CX35 (/IC) P0CX35 (/IC) P0CX35 (/IC) P0CX35 (/IC) P0CX36 (/IC) P0CX36 (/IC)
(10 more)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
4 P41042 (/TAS) P41042 (/TAS) P41042 (/TAS) P41042 (/TAS)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
3 P87158 (/ISO) Q9P4W9 (/ISO) Q9USW5 (/ISO)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
3 Q386F2 (/ISM) Q386F2 (/ISM) Q386F2 (/ISM)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
2 P22090 (/TAS) P22090 (/TAS)
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
1 Q642H9 (/IMP)
Actin cytoskeleton organization GO:0030036
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
1 P51405 (/IMP)
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
1 Q642H9 (/IMP)

There are 45 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
283 O62738 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS)
(273 more)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
283 O62738 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS) P62702 (/ISS)
(273 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
66 P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX35 (/IDA) P0CX36 (/IDA) P0CX36 (/IDA)
(56 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
49 P22090 (/TAS) P22090 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS)
(39 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
49 P22090 (/TAS) P22090 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS) P62701 (/TAS)
(39 more)
Polysome GO:0005844
A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.
49 P22090 (/IDA) P22090 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA)
(39 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
49 P22090 (/HDA) P22090 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA)
(39 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
49 P22090 (/NAS) P22090 (/NAS) P62701 (/NAS) P62701 (/NAS) P62701 (/NAS) P62701 (/NAS) P62701 (/NAS) P62701 (/NAS) P62701 (/NAS) P62701 (/NAS)
(39 more)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
47 P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA)
(37 more)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
47 P62703 (/IDA) P62703 (/IDA) P62703 (/IDA) P62703 (/IDA) P62703 (/IDA) P62703 (/IDA) P62703 (/IDA) P62703 (/IDA) P62703 (/IDA) P62703 (/IDA)
(37 more)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
47 P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO)
(37 more)
Polysome GO:0005844
A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.
47 P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO) P62702 (/ISO)
(37 more)
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
47 P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA)
(37 more)
Small ribosomal subunit GO:0015935
The smaller of the two subunits of a ribosome.
47 P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA)
(37 more)
Small ribosomal subunit GO:0015935
The smaller of the two subunits of a ribosome.
47 P62702 (/ISA) P62702 (/ISA) P62702 (/ISA) P62702 (/ISA) P62702 (/ISA) P62702 (/ISA) P62702 (/ISA) P62702 (/ISA) P62702 (/ISA) P62702 (/ISA)
(37 more)
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
47 P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA)
(37 more)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
47 P62702 (/EXP) P62702 (/EXP) P62702 (/EXP) P62702 (/EXP) P62702 (/EXP) P62702 (/EXP) P62702 (/EXP) P62702 (/EXP) P62702 (/EXP) P62702 (/EXP)
(37 more)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
47 P62702 (/IDA) P62702 (/IDA) P62702 (/IDA) P62702 (/IDA) P62702 (/IDA) P62702 (/IDA) P62702 (/IDA) P62702 (/IDA) P62702 (/IDA) P62702 (/IDA)
(37 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
47 P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA) P62701 (/HDA)
(37 more)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
47 P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA) P62701 (/IDA)
(37 more)
90S preribosome GO:0030686
A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
16 P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX36 (/HDA) P0CX36 (/HDA)
(6 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
8 P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA) P0CX35 (/HDA)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
6 P22090 (/TAS) P22090 (/TAS) P41042 (/TAS) P41042 (/TAS) P41042 (/TAS) P41042 (/TAS)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
5 Q386F2 (/IDA) Q386F2 (/IDA) Q386F2 (/IDA) Q8VYK6 (/IDA) Q8VYK6 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
4 P41042 (/HDA) P41042 (/HDA) P41042 (/HDA) P41042 (/HDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
4 P49204 (/IDA) P49204 (/IDA) Q8VYK6 (/IDA) Q8VYK6 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 Q386F2 (/IDA) Q386F2 (/IDA) Q386F2 (/IDA)
Vacuolar membrane GO:0005774
The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
3 P49204 (/IDA) P49204 (/IDA) Q93VH9 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
3 P87158 (/HDA) Q9P4W9 (/HDA) Q9USW5 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
3 Q8VYK6 (/IDA) Q8VYK6 (/IDA) Q93VH9 (/IDA)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
3 Q386F2 (/ISM) Q386F2 (/ISM) Q386F2 (/ISM)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
3 P87158 (/ISO) Q9P4W9 (/ISO) Q9USW5 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 P22090 (/HDA) P22090 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 P46299 (/TAS) P46299 (/TAS)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
2 Q8VYK6 (/IDA) Q8VYK6 (/IDA)
Ribosomal subunit GO:0044391
Either of the two subunits of a ribosome: the ribosomal large subunit or the ribosomal small subunit.
2 P46299 (/TAS) P46299 (/TAS)
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
1 C8VAM4 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q9USW5 (/HDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q4QG31 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q4QG31 (/ISO)
Cytoskeleton GO:0005856
Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
1 P51405 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
1 Q93VH9 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
1 Q93VH9 (/IDA)
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
1 P51405 (/HDA)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
1 P51405 (/IDA)