The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 106: Polycomb complex protein BMI-1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 11 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Promoter-specific chromatin binding GO:1990841
Interacting selectively and non-covalently with a section of chromatin that is associated with gene promoter sequences of DNA.
29 P25916 (/ISS) P25916 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS)
(19 more)
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
25 P25916 (/ISS) P25916 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS)
(15 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
18 P25916 (/IPI) P25916 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI)
(8 more)
Promoter-specific chromatin binding GO:1990841
Interacting selectively and non-covalently with a section of chromatin that is associated with gene promoter sequences of DNA.
18 P25916 (/IDA) P25916 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(8 more)
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
16 P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(6 more)
RING-like zinc finger domain binding GO:0071535
Interacting selectively and non-covalently with a RING-like zinc finger domain domain of a protein. The RING-like domain is a zinc finger domain that is related to the C3HC4 RING finger domain.
16 P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI) P35226 (/IPI)
(6 more)
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
2 P25916 (/IDA) P25916 (/IDA)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
2 P25916 (/IDA) P25916 (/IDA)
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2 P25916 (/IDA) P25916 (/IDA)
Ubiquitin-protein transferase activator activity GO:0097027
Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein.
2 P25916 (/IDA) P25916 (/IDA)
RING-like zinc finger domain binding GO:0071535
Interacting selectively and non-covalently with a RING-like zinc finger domain domain of a protein. The RING-like domain is a zinc finger domain that is related to the C3HC4 RING finger domain.
1 F2Z5D1 (/ISS)

There are 40 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative regulation of gene expression, epigenetic GO:0045814
Any epigenetic process that stops, prevents or reduces the rate of gene expression.
29 P25916 (/ISS) P25916 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS)
(19 more)
Histone H2A-K119 monoubiquitination GO:0036353
The modification of histone H2A by addition of a single ubiquitin group to lysine-119 (H2A- K119) in metazoans, and at the equivalent residue in other organisms.
26 P25916 (/ISS) P25916 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS)
(16 more)
Positive regulation of ubiquitin-protein transferase activity GO:0051443
Any process that activates, maintains or increases the rate of ubiquitin transferase activity.
26 F2Z5D1 (/ISS) P25916 (/ISS) P25916 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS)
(16 more)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
18 P25916 (/IMP) P25916 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP)
(8 more)
Segment specification GO:0007379
The process in which segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes.
16 P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS)
(6 more)
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
16 P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP)
(6 more)
Hemopoiesis GO:0030097
The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
16 P35226 (/IEP) P35226 (/IEP) P35226 (/IEP) P35226 (/IEP) P35226 (/IEP) P35226 (/IEP) P35226 (/IEP) P35226 (/IEP) P35226 (/IEP) P35226 (/IEP)
(6 more)
Histone H2A-K119 monoubiquitination GO:0036353
The modification of histone H2A by addition of a single ubiquitin group to lysine-119 (H2A- K119) in metazoans, and at the equivalent residue in other organisms.
16 P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP)
(6 more)
Negative regulation of gene expression, epigenetic GO:0045814
Any epigenetic process that stops, prevents or reduces the rate of gene expression.
16 P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP)
(6 more)
Positive regulation of fibroblast proliferation GO:0048146
Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells.
16 P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP) P35226 (/IMP)
(6 more)
Positive regulation of ubiquitin-protein transferase activity GO:0051443
Any process that activates, maintains or increases the rate of ubiquitin transferase activity.
16 P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(6 more)
Negative regulation of G0 to G1 transition GO:0070317
A cell cycle process that stops, prevents, or reduces the rate or extent of the transition from the G0 quiescent state to the G1 phase.
16 P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS)
(6 more)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
2 P25916 (/IDA) P25916 (/IDA)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
2 P25916 (/IGI) P25916 (/IGI)
Skeletal system development GO:0001501
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
2 P25916 (/IMP) P25916 (/IMP)
In utero embryonic development GO:0001701
The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
2 P25916 (/IGI) P25916 (/IGI)
DNA methylation GO:0006306
The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
2 P25916 (/IMP) P25916 (/IMP)
Humoral immune response GO:0006959
An immune response mediated through a body fluid.
2 P25916 (/IMP) P25916 (/IMP)
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
2 P25916 (/IMP) P25916 (/IMP)
Cellular process GO:0009987
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
2 P25916 (/TAS) P25916 (/TAS)
Histone acetylation GO:0016573
The modification of a histone by the addition of an acetyl group.
2 P25916 (/IGI) P25916 (/IGI)
Histone ubiquitination GO:0016574
The modification of histones by addition of ubiquitin groups.
2 P25916 (/IDA) P25916 (/IDA)
Cerebellum development GO:0021549
The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills.
2 Q7T3E6 (/IGI) Q8JIR0 (/IGI)
Rostrocaudal neural tube patterning GO:0021903
The process in which the neural tube is divided into specific regions along the rostrocaudal axis.
2 P25916 (/IMP) P25916 (/IMP)
Positive regulation of B cell proliferation GO:0030890
Any process that activates or increases the rate or extent of B cell proliferation.
2 P25916 (/IMP) P25916 (/IMP)
Positive regulation of immature T cell proliferation in thymus GO:0033092
Any process that activates or increases the frequency, rate or extent of immature T cell proliferation in the thymus.
2 P25916 (/IMP) P25916 (/IMP)
Somatic stem cell division GO:0048103
The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line.
2 P25916 (/IMP) P25916 (/IMP)
Embryonic skeletal system morphogenesis GO:0048704
The process in which the anatomical structures of the skeleton are generated and organized during the embryonic phase.
2 P25916 (/IGI) P25916 (/IGI)
Embryonic skeletal system development GO:0048706
The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure.
2 P25916 (/IGI) P25916 (/IGI)
Hematopoietic stem cell homeostasis GO:0061484
Any biological process involved in the maintenance of the steady-state number of hematopoietic stem cells within a population of cells.
2 P25916 (/ISO) P25916 (/ISO)
Regulation of adaxial/abaxial pattern formation GO:2000011
Any process that modulates the frequency, rate or extent of adaxial/abaxial pattern formation.
2 P25916 (/IGI) P25916 (/IGI)
Negative regulation of apoptotic signaling pathway GO:2001234
Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic signaling pathway.
2 P25916 (/IGI) P25916 (/IGI)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 F2Z5D1 (/ISS)
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
1 F2Z5D1 (/IMP)
Hematopoietic stem cell migration GO:0035701
The orderly movement of a hematopoietic stem cell from one site to another. A hematopoietic stem cell is a cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system.
1 Q8JIR0 (/IMP)
Positive regulation of fibroblast proliferation GO:0048146
Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells.
1 F2Z5D1 (/ISS)
Positive regulation of epithelial cell proliferation GO:0050679
Any process that activates or increases the rate or extent of epithelial cell proliferation.
1 F2Z5D1 (/IMP)
Primitive hemopoiesis GO:0060215
A first transient wave of blood cell production that, in vertebrates, gives rise to erythrocytes (red blood cells) and myeloid cells.
1 Q8JIR0 (/IMP)
Cellular response to interleukin-1 GO:0071347
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus.
1 B4F7B6 (/IEP)
Cellular response to dexamethasone stimulus GO:0071549
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus.
1 B4F7B6 (/IEP)

There are 13 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
PcG protein complex GO:0031519
A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure.
27 Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS)
(17 more)
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
26 F2Z5D1 (/ISS) P25916 (/ISS) P25916 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q32KX7 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS) Q5R8L2 (/ISS)
(16 more)
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
22 P25916 (/IDA) P25916 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(12 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
20 P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(10 more)
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
18 P25916 (/IDA) P25916 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(8 more)
PcG protein complex GO:0031519
A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure.
18 P25916 (/IDA) P25916 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(8 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
16 P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(6 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
16 P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS) P35226 (/TAS)
(6 more)
PRC1 complex GO:0035102
A multiprotein complex that mediates monoubiquitination of lysine residues of histone H2A (lysine-118 in Drosophila or lysine-119 in mammals). The complex is required for stable long-term maintenance of transcriptionally repressed states and is involved in chromatin remodeling.
16 P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA) P35226 (/IDA)
(6 more)
Heterochromatin GO:0000792
A compact and highly condensed form of chromatin.
2 P25916 (/IDA) P25916 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 P25916 (/ISO) P25916 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 F2Z5D1 (/ISS)
PRC1 complex GO:0035102
A multiprotein complex that mediates monoubiquitination of lysine residues of histone H2A (lysine-118 in Drosophila or lysine-119 in mammals). The complex is required for stable long-term maintenance of transcriptionally repressed states and is involved in chromatin remodeling.
1 F2Z5D1 (/ISS)