The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Nucleic acid-binding proteins
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 168: 26S protease regulatory subunit 10B

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
7 P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
7 P53549 (/ISS) P53549 (/ISS) P53549 (/ISS) P53549 (/ISS) P53549 (/ISS) P53549 (/ISS) P53549 (/ISS)
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
7 P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA)
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
7 P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI) P53549 (/IPI)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleotide-excision repair GO:0006289
A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
7 P53549 (/IGI) P53549 (/IGI) P53549 (/IGI) P53549 (/IGI) P53549 (/IGI) P53549 (/IGI) P53549 (/IGI)
Ubiquitin-dependent ERAD pathway GO:0030433
The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
7 P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
7 P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP)
Positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GO:0045899
Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
7 P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP)
Proteasome regulatory particle assembly GO:0070682
The aggregation, arrangement and bonding together of a mature, active proteasome regulatory particle complex.
7 P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP) P53549 (/IMP)
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
5 Q38BP7 (/IMP) Q38BP7 (/IMP) Q9NC97 (/IMP) Q9NC97 (/IMP) Q9NC97 (/IMP)

There are 3 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
7 P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA)
Proteasome regulatory particle, base subcomplex GO:0008540
The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex.
7 P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA) P53549 (/IDA)
Proteasome regulatory particle GO:0005838
A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.
5 Q38BP7 (/IDA) Q38BP7 (/IDA) Q9NC97 (/IDA) Q9NC97 (/IDA) Q9NC97 (/IDA)