The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Core binding factor, beta subunit
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Core-binding factor subunit beta

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 12 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
28 Q08024 (/IPI) Q08024 (/IPI) Q13951 (/IPI) Q13951 (/IPI) Q13951 (/IPI) Q13951 (/IPI) Q13951 (/IPI) Q13951 (/IPI) Q13951 (/IPI) Q13951 (/IPI)
(18 more)
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
26 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(16 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
25 Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM) Q13951 (/ISM)
(15 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
25 Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS) Q13951 (/NAS)
(15 more)
Protein heterodimerization activity GO:0046982
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
6 A0A0B4P4A4 (/IPI) A0A0B4P4E8 (/IPI) A0A0B4P506 (/IPI) A0A0B4PIS7 (/IPI) A0A140LGT1 (/IPI) Q98U16 (/IPI)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
5 Q24039 (/IDA) Q24040 (/IDA) Q24040 (/IDA) Q24040 (/IDA) Q24040 (/IDA)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
5 Q24039 (/TAS) Q24040 (/TAS) Q24040 (/TAS) Q24040 (/TAS) Q24040 (/TAS)
Protein heterodimerization activity GO:0046982
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
5 Q24039 (/TAS) Q24040 (/TAS) Q24040 (/TAS) Q24040 (/TAS) Q24040 (/TAS)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
4 Q24040 (/IPI) Q24040 (/IPI) Q24040 (/IPI) Q24040 (/IPI)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
4 Q24040 (/ISS) Q24040 (/ISS) Q24040 (/ISS) Q24040 (/ISS)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
2 Q08024 (/ISO) Q08024 (/ISO)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
1 Q66HA7 (/IDA)

There are 36 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
25 Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS)
(15 more)
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
25 Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP) Q13951 (/IMP)
(15 more)
Regulation of cytokine-mediated signaling pathway GO:0001959
Any process that modulates the frequency, rate or extent of the cytokine mediated signaling pathway.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of Wnt signaling pathway GO:0030111
Any process that modulates the frequency, rate or extent of the activity of the Wnt signal transduction pathway.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of intracellular estrogen receptor signaling pathway GO:0033146
Any process that modulates the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Negative regulation of CD4-positive, alpha-beta T cell differentiation GO:0043371
Any process that stops, prevents, or reduces the frequency, rate, or extent of CD4-positive, alpha-beta T cell differentiation.
25 Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS)
(15 more)
Positive regulation of CD8-positive, alpha-beta T cell differentiation GO:0043378
Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell differentiation.
25 Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS) Q13951 (/ISS)
(15 more)
Regulation of regulatory T cell differentiation GO:0045589
Any process that modulates the frequency, rate or extent of differentiation of regulatory T cells.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of keratinocyte differentiation GO:0045616
Any process that modulates the frequency, rate or extent of keratinocyte differentiation.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of myeloid cell differentiation GO:0045637
Any process that modulates the frequency, rate or extent of myeloid cell differentiation.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of megakaryocyte differentiation GO:0045652
Any process that modulates the frequency, rate or extent of megakaryocyte differentiation.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of B cell receptor signaling pathway GO:0050855
Any process that modulates the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B cell.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of hematopoietic stem cell differentiation GO:1902036
Any process that modulates the frequency, rate or extent of hematopoietic stem cell differentiation.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of bicellular tight junction assembly GO:2000810
Any process that modulates the frequency, rate or extent of tight junction assembly.
25 Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(15 more)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
6 A0A0B4P4A4 (/IC) A0A0B4P4E8 (/IC) A0A0B4P506 (/IC) A0A0B4PIS7 (/IC) A0A140LGT1 (/IC) Q98U16 (/IC)
Hemopoiesis GO:0030097
The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
6 A0A0B4P4A4 (/IMP) A0A0B4P4E8 (/IMP) A0A0B4P506 (/IMP) A0A0B4PIS7 (/IMP) A0A140LGT1 (/IMP) Q98U16 (/IMP)
Sarcomere organization GO:0045214
The myofibril assembly process that results in the organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
6 A0A0B4P4A4 (/IMP) A0A0B4P4E8 (/IMP) A0A0B4P506 (/IMP) A0A0B4PIS7 (/IMP) A0A140LGT1 (/IMP) Q98U16 (/IMP)
Sarcomerogenesis GO:0048769
The process in which sarcomeres are added in series within a fiber.
6 A0A0B4P4A4 (/IMP) A0A0B4P4E8 (/IMP) A0A0B4P506 (/IMP) A0A0B4PIS7 (/IMP) A0A140LGT1 (/IMP) Q98U16 (/IMP)
Heart contraction GO:0060047
The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body.
6 A0A0B4P4A4 (/IMP) A0A0B4P4E8 (/IMP) A0A0B4P506 (/IMP) A0A0B4PIS7 (/IMP) A0A140LGT1 (/IMP) Q98U16 (/IMP)
Lymphoid lineage cell migration into thymus GO:0097535
The movement of a lymphoid lineage cell (also called a lymphoid lineage restricted progenitor cell) into the thymus. Lymphoid lineage cells enter and exit the thymus several times as part of this process.
6 A0A0B4P4A4 (/IMP) A0A0B4P4E8 (/IMP) A0A0B4P506 (/IMP) A0A0B4PIS7 (/IMP) A0A140LGT1 (/IMP) Q98U16 (/IMP)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
5 Q24039 (/TAS) Q24040 (/TAS) Q24040 (/TAS) Q24040 (/TAS) Q24040 (/TAS)
Regulation of hemocyte proliferation GO:0035206
Any process that modulates the frequency, rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster.
5 Q24039 (/IMP) Q24040 (/IMP) Q24040 (/IMP) Q24040 (/IMP) Q24040 (/IMP)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
2 Q08024 (/IMP) Q08024 (/IMP)
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
2 Q08024 (/ISO) Q08024 (/ISO)
Ossification GO:0001503
The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
2 Q08024 (/IMP) Q08024 (/IMP)
Osteoblast differentiation GO:0001649
The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
2 Q08024 (/IMP) Q08024 (/IMP)
Lymphocyte differentiation GO:0030098
The process in which a relatively unspecialized precursor cell acquires specialized features of a lymphocyte. A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin.
2 Q08024 (/IMP) Q08024 (/IMP)
Myeloid cell differentiation GO:0030099
The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages.
2 Q08024 (/IMP) Q08024 (/IMP)
Negative regulation of CD4-positive, alpha-beta T cell differentiation GO:0043371
Any process that stops, prevents, or reduces the frequency, rate, or extent of CD4-positive, alpha-beta T cell differentiation.
2 Q08024 (/IMP) Q08024 (/IMP)
Positive regulation of CD8-positive, alpha-beta T cell differentiation GO:0043378
Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell differentiation.
2 Q08024 (/IMP) Q08024 (/IMP)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
2 Q08024 (/IDA) Q08024 (/IDA)
Cell maturation GO:0048469
A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state.
2 Q08024 (/IMP) Q08024 (/IMP)
Definitive hemopoiesis GO:0060216
A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood.
2 Q08024 (/IMP) Q08024 (/IMP)
Compound eye development GO:0048749
The process whose specific outcome is the progression of the compound eye over time, from its formation to the mature structure. The compound eye is an organ of sight that contains multiple repeating units, often arranged hexagonally. Each unit has its own lens and photoreceptor cell(s) and can generate either a single pixelated image or multiple images, per eye.
1 Q24039 (/TAS)

There are 8 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
28 Q08024 (/TAS) Q08024 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(18 more)
Core-binding factor complex GO:0016513
A heterodimeric transcription factor complex that contains an alpha subunit (Runx1, Runx2 or Runx3 in human) that binds DNA and a non-DNA-binding beta subunit (CBFbeta), and binds to a consensus sequence 5'-YGYGGTY-3' found in several enhancers and promoters; the beta subunit enhances the DNA binding of the alpha subunit.
27 Q08024 (/TAS) Q08024 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS) Q13951 (/TAS)
(17 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
25 Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA) Q13951 (/HDA)
(15 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
13 A0A0B4P4A4 (/IDA) A0A0B4P4E8 (/IDA) A0A0B4P506 (/IDA) A0A0B4PIS7 (/IDA) A0A140LGT1 (/IDA) Q08024 (/IDA) Q08024 (/IDA) Q24039 (/IDA) Q24040 (/IDA) Q24040 (/IDA)
(3 more)
Core-binding factor complex GO:0016513
A heterodimeric transcription factor complex that contains an alpha subunit (Runx1, Runx2 or Runx3 in human) that binds DNA and a non-DNA-binding beta subunit (CBFbeta), and binds to a consensus sequence 5'-YGYGGTY-3' found in several enhancers and promoters; the beta subunit enhances the DNA binding of the alpha subunit.
6 A0A0B4P4A4 (/IPI) A0A0B4P4E8 (/IPI) A0A0B4P506 (/IPI) A0A0B4PIS7 (/IPI) A0A140LGT1 (/IPI) Q98U16 (/IPI)
Z disc GO:0030018
Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
6 A0A0B4P4A4 (/IDA) A0A0B4P4E8 (/IDA) A0A0B4P506 (/IDA) A0A0B4PIS7 (/IDA) A0A140LGT1 (/IDA) Q98U16 (/IDA)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
2 Q08024 (/ISO) Q08024 (/ISO)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
1 E1B9S8 (/IDA)
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