The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
CCR4-NOT complex subunit 2/3/5, C-terminal domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 12: CCR4-NOT transcriptional complex subunit

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
10 P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI)

There are 11 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay GO:0000288
A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability.
10 P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA)
Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay GO:0000288
A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability.
10 P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP)
Nuclear-transcribed mRNA poly(A) tail shortening GO:0000289
Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length.
10 P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA)
Deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000290
Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length.
10 P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP)
Response to pheromone triggering conjugation with cellular fusion GO:0000749
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus that positively regulates the process of conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae.
10 P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
10 P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI)
Transcription elongation from RNA polymerase II promoter GO:0006368
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
10 P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
10 P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP)
Deadenylation-independent decapping of nuclear-transcribed mRNA GO:0031087
Cleavage of the 5'-cap of a nuclear-transcribed mRNA that is independent of poly(A) tail shortening.
10 P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
10 P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA)
Regulation of cell cycle GO:0051726
Any process that modulates the rate or extent of progression through the cell cycle.
10 P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP) P06100 (/IMP)

There are 3 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
10 P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
10 P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA) P06100 (/IDA)
CCR4-NOT core complex GO:0030015
The core of the CCR4-NOT complex. In Saccharomyces the CCR4-NOT core complex comprises Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p.
10 P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI) P06100 (/IPI)