The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 45: U6 snRNA-associated Sm-like protein LSm1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA cap binding GO:0000339
Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
7 P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
7 P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
7 P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
7 P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI)
RNA cap binding GO:0000339
Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
1 Q54W83 (/ISS)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q54W83 (/ISS)

There are 3 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay GO:0000288
A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability.
7 P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP)
Deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000290
Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length.
7 P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP)
MRNA catabolic process GO:0006402
The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
1 Q54W83 (/ISS)

There are 9 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
8 P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) Q20229 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
8 P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) Q20229 (/IDA)
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
7 P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP) P47017 (/IMP)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
7 P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
7 P47017 (/HDA) P47017 (/HDA) P47017 (/HDA) P47017 (/HDA) P47017 (/HDA) P47017 (/HDA) P47017 (/HDA)
MRNA cap binding complex GO:0005845
Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA.
7 P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI) P47017 (/IPI)
Lsm1-7-Pat1 complex GO:1990726
A conserved, heteroheptameric, cytoplasmic protein complex composed of Lsm1, Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Pat1, or orthologs thereof, that shows a strong binding preference for oligoadenylated RNAs over polyadenylated RNAs. May bind further associated proteins. Facilitates the deadenylation-dependent decapping of mRNA in the P-body thereby regulating mRNA decay and subsequent degradation by the 5' to 3' pathway.
7 P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA) P47017 (/IDA)
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
1 Q54W83 (/ISS)
Cytoplasmic stress granule GO:0010494
A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress.
1 Q20229 (/IDA)