The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"WRKY domain
".
FunFam 3: WRKY transcription factor 57
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 12 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
33 |
O22900 (/ISS)
Q8GY11 (/ISS)
Q8VWJ2 (/ISS)
Q8VWJ2 (/ISS)
Q8VWQ4 (/ISS)
Q8VWQ4 (/ISS)
Q8VWQ5 (/ISS)
Q8VWQ5 (/ISS)
Q93WU9 (/ISS)
Q93WU9 (/ISS)
(23 more) |
|
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
|
10 | Q9C983 (/IDA) Q9C983 (/IDA) Q9FYA2 (/IDA) Q9FYA2 (/IDA) Q9S763 (/IDA) Q9S763 (/IDA) Q9S763 (/IDA) Q9SVB7 (/IDA) Q9SVB7 (/IDA) Q9SVB7 (/IDA) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
7 | Q93WU9 (/IPI) Q93WU9 (/IPI) Q9FL26 (/IPI) Q9LG05 (/IPI) Q9S763 (/IPI) Q9S763 (/IPI) Q9S763 (/IPI) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
6 | Q8VWJ2 (/IDA) Q8VWJ2 (/IDA) Q9C983 (/IDA) Q9C983 (/IDA) Q9FL26 (/IDA) Q9LG05 (/IDA) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
5 | Q9C983 (/IPI) Q9C983 (/IPI) Q9S763 (/IPI) Q9S763 (/IPI) Q9S763 (/IPI) |
|
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
3 | Q9SVB7 (/IDA) Q9SVB7 (/IDA) Q9SVB7 (/IDA) |
|
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
|
3 | Q9S763 (/IDA) Q9S763 (/IDA) Q9S763 (/IDA) |
|
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
|
3 | Q9S763 (/IPI) Q9S763 (/IPI) Q9S763 (/IPI) |
|
Sequence-specific double-stranded DNA binding GO:1990837
Interacting selectively and non-covalently with double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.
|
3 | Q93WV4 (/IDA) Q93WV4 (/IDA) Q93WV4 (/IDA) |
|
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
2 | Q9FYA2 (/IPI) Q9FYA2 (/IPI) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
2 | Q8VWJ2 (/IDA) Q8VWJ2 (/IDA) |
|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | Q9FGZ4 (/IDA) |
There are 30 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Jasmonic acid mediated signaling pathway GO:0009867
A series of molecular signals mediated by jasmonic acid.
|
4 | Q8VWQ5 (/IGI) Q8VWQ5 (/IGI) Q93WU9 (/IGI) Q93WU9 (/IGI) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | Q93WV4 (/IDA) Q93WV4 (/IDA) Q93WV4 (/IDA) Q9FGZ4 (/IDA) |
|
Defense response to fungus GO:0050832
Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
|
4 | Q8VWQ5 (/IGI) Q8VWQ5 (/IGI) Q93WU9 (/IGI) Q93WU9 (/IGI) |
|
Phosphate ion transport GO:0006817
The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
|
3 | Q9S763 (/IMP) Q9S763 (/IMP) Q9S763 (/IMP) |
|
Vegetative to reproductive phase transition of meristem GO:0010228
The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
|
3 | Q93WV4 (/IMP) Q93WV4 (/IMP) Q93WV4 (/IMP) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
3 | Q9SVB7 (/IMP) Q9SVB7 (/IMP) Q9SVB7 (/IMP) |
|
Regulation of lignin biosynthetic process GO:1901141
Any process that modulates the frequency, rate or extent of lignin biosynthetic process.
|
3 | Q9SVB7 (/IMP) Q9SVB7 (/IMP) Q9SVB7 (/IMP) |
|
Positive regulation of sclerenchyma cell differentiation GO:1904369
Any process that activates or increases the frequency, rate or extent of sclerenchyma cell differentiation.
|
3 | Q9SVB7 (/IMP) Q9SVB7 (/IMP) Q9SVB7 (/IMP) |
|
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
2 | Q9FYA2 (/IMP) Q9FYA2 (/IMP) |
|
Response to osmotic stress GO:0006970
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
|
2 | Q9C983 (/IMP) Q9C983 (/IMP) |
|
Response to water deprivation GO:0009414
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
|
2 | Q9C983 (/IMP) Q9C983 (/IMP) |
|
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
|
2 | Q9C983 (/IMP) Q9C983 (/IMP) |
|
Atrichoblast differentiation GO:0010055
The process in which a relatively unspecialized cell acquires the specialized features of an atrichoblast, a root epidermal cell that will not give rise to a root hair.
|
2 | Q9FYA2 (/IMP) Q9FYA2 (/IMP) |
|
Regulation of response to nutrient levels GO:0032107
Any process that modulates the frequency, rate or extent of a response to nutrient levels.
|
2 | Q9FYA2 (/IMP) Q9FYA2 (/IMP) |
|
Regulation of cell fate specification GO:0042659
Any process that mediates the adoption of a specific fate by a cell.
|
2 | Q8VWJ2 (/IMP) Q8VWJ2 (/IMP) |
|
Defense response to bacterium GO:0042742
Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
|
2 | Q93WU9 (/IGI) Q93WU9 (/IGI) |
|
Defense response to bacterium GO:0042742
Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
|
2 | Q9FGZ4 (/IMP) Q9FL26 (/IMP) |
|
Regulation of DNA-templated transcription in response to stress GO:0043620
Modulation of the frequency, rate or extent of transcription from a DNA template as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
|
2 | Q9FYA2 (/IMP) Q9FYA2 (/IMP) |
|
Lateral root development GO:0048527
The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
|
2 | Q9FYA2 (/IMP) Q9FYA2 (/IMP) |
|
Response to bacterium GO:0009617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
|
1 | Q9FGZ4 (/IEP) |
|
Response to nematode GO:0009624
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
|
1 | O22900 (/IEP) |
|
Response to auxin GO:0009733
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
|
1 | O22900 (/IEP) |
|
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
1 | Q9FL26 (/IEP) |
|
Endosperm development GO:0009960
The process whose specific outcome is the progression of the endosperm over time, from its formation to the mature structure. The endosperm is formed during fertilization and provides nutrients to the developing embryo.
|
1 | Q9LG05 (/IMP) |
|
Response to chitin GO:0010200
A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
|
1 | Q9FGZ4 (/IEP) |
|
Defense response to fungus GO:0050832
Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
|
1 | Q9FL26 (/IMP) |
|
Defense response to virus GO:0051607
Reactions triggered in response to the presence of a virus that act to protect the cell or organism.
|
1 | Q9FL26 (/IMP) |
|
Cellular response to hydrogen peroxide GO:0070301
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
|
1 | Q9FL26 (/IEP) |
|
Positive regulation of response to salt stress GO:1901002
Any process that activates or increases the frequency, rate or extent of response to salt stress.
|
1 | Q9FL26 (/IMP) |
|
Protein localization involved in auxin polar transport GO:1901703
Any protein localization that is involved in auxin polar transport.
|
1 | O22900 (/IMP) |
There are 1 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
10 | Q93WV4 (/IDA) Q93WV4 (/IDA) Q93WV4 (/IDA) Q9FGZ4 (/IDA) Q9FL26 (/IDA) Q9FYA2 (/IDA) Q9FYA2 (/IDA) Q9S763 (/IDA) Q9S763 (/IDA) Q9S763 (/IDA) |