The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
YVTN repeat-like/Quinoprotein amine dehydrogenase
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 94: WD repeat-containing protein 61

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
19 Q9ERF3 (/IPI) Q9ERF3 (/IPI) Q9GZS3 (/IPI) Q9GZS3 (/IPI) Q9GZS3 (/IPI) Q9GZS3 (/IPI) Q9GZS3 (/IPI) Q9GZS3 (/IPI) Q9GZS3 (/IPI) Q9GZS3 (/IPI)
(9 more)

There are 22 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
17 Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS)
(7 more)
Transcription elongation from RNA polymerase II promoter GO:0006368
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
17 Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS)
(7 more)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
17 Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS)
(7 more)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Exonucleolytic catabolism of deadenylated mRNA GO:0043928
The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 3'-poly(A) tail.
17 Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS)
(7 more)
Negative regulation of myeloid cell differentiation GO:0045638
Any process that stops, prevents, or reduces the frequency, rate or extent of myeloid cell differentiation.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Positive regulation of histone H3-K4 methylation GO:0051571
Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3.
17 Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP)
(7 more)
Histone H3-K4 trimethylation GO:0080182
The modification of histone H3 by addition of three methyl groups to lysine at position 4 of the histone.
17 Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP)
(7 more)
Positive regulation of histone H3-K79 methylation GO:2001162
Any process that activates or increases the frequency, rate or extent of histone H3-K79 methylation.
17 Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP) Q9GZS3 (/IMP)
(7 more)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
11 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6P5M2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS)
(1 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
11 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6P5M2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS)
(1 more)
Positive regulation of histone H3-K4 methylation GO:0051571
Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3.
10 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS) Q9ERF3 (/ISS)
Histone H3-K4 trimethylation GO:0080182
The modification of histone H3 by addition of three methyl groups to lysine at position 4 of the histone.
10 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS) Q9ERF3 (/ISS)
Positive regulation of histone H3-K79 methylation GO:2001162
Any process that activates or increases the frequency, rate or extent of histone H3-K79 methylation.
10 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS) Q9ERF3 (/ISS)
Negative regulation of myeloid cell differentiation GO:0045638
Any process that stops, prevents, or reduces the frequency, rate or extent of myeloid cell differentiation.
9 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q9ERF3 (/ISS) Q9ERF3 (/ISS)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Negative regulation of myeloid cell differentiation GO:0045638
Any process that stops, prevents, or reduces the frequency, rate or extent of myeloid cell differentiation.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Positive regulation of histone H3-K4 methylation GO:0051571
Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Histone H3-K4 trimethylation GO:0080182
The modification of histone H3 by addition of three methyl groups to lysine at position 4 of the histone.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Positive regulation of histone H3-K79 methylation GO:2001162
Any process that activates or increases the frequency, rate or extent of histone H3-K79 methylation.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)

There are 22 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
20 H0YN81 (/IDA) H0YN81 (/IDA) H0YN81 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(10 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
20 H0YN81 (/IDA) H0YN81 (/IDA) H0YN81 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(10 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
17 Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS)
(7 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
17 Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS) Q9GZS3 (/TAS)
(7 more)
Cdc73/Paf1 complex GO:0016593
A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Transcriptionally active chromatin GO:0035327
The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Ski complex GO:0055087
A protein complex that regulates RNA degradation by the exosome complex. In Saccharomyces the complex has a heterotetrameric stoichiometry consisting of one copy each of Ski2p and Ski3 and two copies of Ski8p.
17 Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA) Q9GZS3 (/IDA)
(7 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
11 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6P5M2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS)
(1 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
11 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6P5M2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS)
(1 more)
Cdc73/Paf1 complex GO:0016593
A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.
11 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6P5M2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS)
(1 more)
Transcriptionally active chromatin GO:0035327
The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed.
11 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6P5M2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS)
(1 more)
Ski complex GO:0055087
A protein complex that regulates RNA degradation by the exosome complex. In Saccharomyces the complex has a heterotetrameric stoichiometry consisting of one copy each of Ski2p and Ski3 and two copies of Ski8p.
11 Q32LN7 (/ISS) Q32LN7 (/ISS) Q32LN7 (/ISS) Q4V7A0 (/ISS) Q5ZJH5 (/ISS) Q6GMD2 (/ISS) Q6GMD2 (/ISS) Q6P5M2 (/ISS) Q6PBD6 (/ISS) Q9ERF3 (/ISS)
(1 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Cdc73/Paf1 complex GO:0016593
A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.
2 Q9ERF3 (/IPI) Q9ERF3 (/IPI)
Cdc73/Paf1 complex GO:0016593
A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Transcriptionally active chromatin GO:0035327
The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)
Ski complex GO:0055087
A protein complex that regulates RNA degradation by the exosome complex. In Saccharomyces the complex has a heterotetrameric stoichiometry consisting of one copy each of Ski2p and Ski3 and two copies of Ski8p.
2 Q9ERF3 (/ISO) Q9ERF3 (/ISO)