The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Leucine-rich Repeat Variant
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 47: Cullin-associated NEDD8-dissociated protein 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
40 O75155 (/IPI) Q6ZQ38 (/IPI) Q6ZQ73 (/IPI) Q86VP6 (/IPI) Q86VP6 (/IPI) Q86VP6 (/IPI) Q86VP6 (/IPI) Q86VP6 (/IPI) Q86VP6 (/IPI) Q86VP6 (/IPI)
(30 more)
TBP-class protein binding GO:0017025
Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
3 P97536 (/IDA) Q6ZQ73 (/IDA) Q9R0L4 (/IDA)
TBP-class protein binding GO:0017025
Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
2 Q6ZQ38 (/ISO) Q6ZQ73 (/ISO)

There are 23 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
39 A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS)
(29 more)
SCF complex assembly GO:0010265
The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex.
38 A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS)
(28 more)
Cellular iron ion homeostasis GO:0006879
Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
SCF complex assembly GO:0010265
The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Cell differentiation GO:0030154
The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Negative regulation of catalytic activity GO:0043086
Any process that stops or reduces the activity of an enzyme.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Neutrophil degranulation GO:0043312
The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
Post-translational protein modification GO:0043687
The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
Cell differentiation GO:0030154
The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
3 F1NHL2 (/ISS) P97536 (/ISS) Q6ZQ38 (/ISS)
Negative regulation of catalytic activity GO:0043086
Any process that stops or reduces the activity of an enzyme.
3 F1NHL2 (/ISS) P97536 (/ISS) Q6ZQ38 (/ISS)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
3 F1NHL2 (/ISS) O75155 (/ISS) Q6ZQ38 (/ISS)
Regulation of protein stability GO:0031647
Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation.
2 Q9VKY2 (/IMP) Q9VKY2 (/IMP)
Negative regulation of protein neddylation GO:2000435
Any process that stops, prevents or reduces the frequency, rate or extent of protein neddylation.
2 Q9VKY2 (/IMP) Q9VKY2 (/IMP)
SCF complex assembly GO:0010265
The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex.
1 Q6ZQ38 (/ISO)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
1 Q6ZQ38 (/ISO)
Cell differentiation GO:0030154
The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
1 Q6ZQ38 (/ISO)
Negative regulation of catalytic activity GO:0043086
Any process that stops or reduces the activity of an enzyme.
1 Q6ZQ38 (/ISO)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
1 P97536 (/IDA)
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
1 Q6ZQ38 (/ISO)
Positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GO:0045899
Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
1 P97536 (/IDA)
Positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GO:0045899
Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
1 Q6ZQ38 (/ISO)
Positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GO:0045899
Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
1 F1NHL2 (/ISS)

There are 26 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
39 A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS)
(29 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
38 P97536 (/IDA) Q6ZQ73 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(28 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
38 A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS)
(28 more)
Cullin-RING ubiquitin ligase complex GO:0031461
Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity.
38 A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS) A7MBJ5 (/ISS)
(28 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
36 O75155 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(26 more)
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
35 Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA)
(25 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
35 Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA)
(25 more)
Cullin-RING ubiquitin ligase complex GO:0031461
Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity.
35 Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA) Q86VP6 (/IDA)
(25 more)
Secretory granule lumen GO:0034774
The volume enclosed by the membrane of a secretory granule.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
35 Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA) Q86VP6 (/HDA)
(25 more)
Ficolin-1-rich granule lumen GO:1904813
Any membrane-enclosed lumen that is part of a ficolin-1-rich granule.
35 Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS) Q86VP6 (/TAS)
(25 more)
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
3 F1NHL2 (/ISS) P97536 (/ISS) Q6ZQ38 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q6ZQ38 (/ISO) Q6ZQ73 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q6ZQ38 (/ISO) Q6ZQ73 (/ISO)
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
1 Q6ZQ38 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q6ZQ38 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q6ZQ38 (/ISO)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
1 Q6ZQ38 (/ISO)
Cullin-RING ubiquitin ligase complex GO:0031461
Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity.
1 Q6ZQ38 (/ISO)