The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
MRG domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Mortality factor 4-like protein 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
16 P60762 (/IPI) P60762 (/IPI) Q15014 (/IPI) Q15014 (/IPI) Q15014 (/IPI) Q15014 (/IPI) Q15014 (/IPI) Q15014 (/IPI) Q15014 (/IPI) Q9UBU8 (/IPI)
(6 more)
Protein N-terminus binding GO:0047485
Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
6 Q9UBU8 (/IPI) Q9UBU8 (/IPI) Q9UBU8 (/IPI) Q9UBU8 (/IPI) Q9UBU8 (/IPI) Q9UBU8 (/IPI)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
3 P60762 (/IDA) P60762 (/IDA) Q9Y0I1 (/IDA)
Protein N-terminus binding GO:0047485
Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
2 P60762 (/ISO) P60762 (/ISO)
Enzyme regulator activity GO:0030234
Binds to and modulates the activity of an enzyme.
1 Q9Y0I1 (/IDA)
Methylated histone binding GO:0035064
Interacting selectively and non-covalently with a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes.
1 Q9Y0I1 (/IDA)

There are 25 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
6 Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA)
Histone deacetylation GO:0016575
The modification of histones by removal of acetyl groups.
6 Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA)
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
6 Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA)
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
6 Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA)
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
4 P60762 (/ISS) P60762 (/ISS) Q5NVP9 (/ISS) Q6AYU1 (/ISS)
Histone deacetylation GO:0016575
The modification of histones by removal of acetyl groups.
4 P60762 (/ISS) P60762 (/ISS) Q5NVP9 (/ISS) Q6AYU1 (/ISS)
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
4 P60762 (/ISS) P60762 (/ISS) Q5NVP9 (/ISS) Q6AYU1 (/ISS)
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
4 P60762 (/ISS) P60762 (/ISS) Q5NVP9 (/ISS) Q6AYU1 (/ISS)
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
2 P60762 (/ISO) P60762 (/ISO)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
2 P60762 (/TAS) P60762 (/TAS)
Cell population proliferation GO:0008283
The multiplication or reproduction of cells, resulting in the expansion of a cell population.
2 P60762 (/IMP) P60762 (/IMP)
Histone deacetylation GO:0016575
The modification of histones by removal of acetyl groups.
2 P60762 (/ISO) P60762 (/ISO)
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
2 P60762 (/ISO) P60762 (/ISO)
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
2 P60762 (/ISO) P60762 (/ISO)
Positive regulation of histone H3-K36 methylation GO:0000416
Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 36 of histone H3.
1 Q9Y0I1 (/IDA)
Chromatin silencing GO:0006342
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
1 Q9Y0I1 (/IMP)
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
1 Q9Y0I1 (/IGI)
Histone acetylation GO:0016573
The modification of a histone by the addition of an acetyl group.
1 Q9Y0I1 (/IDA)
Histone exchange GO:0043486
The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.
1 Q9Y0I1 (/IDA)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
1 Q6QI89 (/IDA)
Positive regulation of striated muscle cell differentiation GO:0051155
Any process that activates or increases the frequency, rate or extent of striated muscle cell differentiation.
1 Q6QI89 (/IDA)
Chromosome organization GO:0051276
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
1 Q9Y0I1 (/IGI)
Chromosome organization GO:0051276
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
1 Q9Y0I1 (/IMP)
Chromosome separation GO:0051304
The cell cycle process in which paired chromosomes are detached from each other. Chromosome separation begins with the release of cohesin complexes from chromosomes; in budding yeast, this includes the cleavage of cohesin complexes along the chromosome arms, followed by the separation of the centromeric regions. Chromosome separation also includes formation of chromatid axes mediated by condensins, and ends with the disentangling of inter-sister catenation catalyzed by topoisomerase II (topo II).
1 Q9Y0I1 (/IGI)
Chromosome separation GO:0051304
The cell cycle process in which paired chromosomes are detached from each other. Chromosome separation begins with the release of cohesin complexes from chromosomes; in budding yeast, this includes the cleavage of cohesin complexes along the chromosome arms, followed by the separation of the centromeric regions. Chromosome separation also includes formation of chromatid axes mediated by condensins, and ends with the disentangling of inter-sister catenation catalyzed by topoisomerase II (topo II).
1 Q9Y0I1 (/IMP)

There are 19 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
13 Q15014 (/TAS) Q15014 (/TAS) Q15014 (/TAS) Q15014 (/TAS) Q15014 (/TAS) Q15014 (/TAS) Q15014 (/TAS) Q9UBU8 (/TAS) Q9UBU8 (/TAS) Q9UBU8 (/TAS)
(3 more)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
9 B3KTM8 (/IDA) B3KTM8 (/IDA) B3KTM8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
8 Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q9Y0I1 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
7 Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
7 Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
7 Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA) Q15014 (/IDA)
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
7 Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9Y0I1 (/IDA)
Sin3 complex GO:0016580
A multiprotein complex that functions broadly in eukaryotic organisms as a transcriptional repressor of protein-coding genes, through the gene-specific deacetylation of histones. Amongst its subunits, the Sin3 complex contains Sin3-like proteins, and a number of core proteins that are shared with the NuRD complex (including histone deacetylases and histone binding proteins). The Sin3 complex does not directly bind DNA itself, but is targeted to specific genes through protein-protein interactions with DNA-binding proteins.
6 Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA) Q9UBU8 (/IDA)
Sin3 complex GO:0016580
A multiprotein complex that functions broadly in eukaryotic organisms as a transcriptional repressor of protein-coding genes, through the gene-specific deacetylation of histones. Amongst its subunits, the Sin3 complex contains Sin3-like proteins, and a number of core proteins that are shared with the NuRD complex (including histone deacetylases and histone binding proteins). The Sin3 complex does not directly bind DNA itself, but is targeted to specific genes through protein-protein interactions with DNA-binding proteins.
4 P60762 (/ISS) P60762 (/ISS) Q5NVP9 (/ISS) Q6AYU1 (/ISS)
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
4 P60762 (/ISS) P60762 (/ISS) Q5NVP9 (/ISS) Q6AYU1 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q9R0Q4 (/ISO) Q9R0Q4 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
2 Q9R0Q4 (/ISO) Q9R0Q4 (/ISO)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
2 Q9R0Q4 (/ISO) Q9R0Q4 (/ISO)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
2 Q9R0Q4 (/ISO) Q9R0Q4 (/ISO)
Sin3 complex GO:0016580
A multiprotein complex that functions broadly in eukaryotic organisms as a transcriptional repressor of protein-coding genes, through the gene-specific deacetylation of histones. Amongst its subunits, the Sin3 complex contains Sin3-like proteins, and a number of core proteins that are shared with the NuRD complex (including histone deacetylases and histone binding proteins). The Sin3 complex does not directly bind DNA itself, but is targeted to specific genes through protein-protein interactions with DNA-binding proteins.
2 P60762 (/ISO) P60762 (/ISO)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
2 P60762 (/ISO) P60762 (/ISO)
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
2 P60762 (/ISO) P60762 (/ISO)
Histone acetyltransferase complex GO:0000123
A protein complex that possesses histone acetyltransferase activity.
1 Q9Y0I1 (/IPI)
Histone methyltransferase complex GO:0035097
A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins.
1 Q9Y0I1 (/IPI)