The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Histone, subunit A
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 36: CBF/NF-Y family transcription factor

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 7 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Core promoter binding GO:0001047
Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for the basal transcription machinery. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
8 P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
8 P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
8 P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
8 P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
8 P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
8 P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
8 P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
8 P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
8 P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI) P40096 (/IGI)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
8 P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
8 P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA)
RNA polymerase II preinitiation complex assembly GO:0051123
The aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase.
8 P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP)
Positive regulation of transcription from RNA polymerase II promoter in response to heat stress GO:0061408
Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
8 P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP) P40096 (/IMP)

There are 2 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative cofactor 2 complex GO:0017054
A heterodimeric protein complex that can stably associate with TATA-binding protein on promoters, thereby preventing the assembly of transcription factors TFIIA and TFIIB and leading to repression of RNA polymerase II transcription. The two subunits, NC2alpha (Drap1) and NC2beta (Dr1), dimerize through histone fold domains of the H2A/H2B type present in the amino termini.
8 P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA) P40096 (/IDA)
Negative cofactor 2 complex GO:0017054
A heterodimeric protein complex that can stably associate with TATA-binding protein on promoters, thereby preventing the assembly of transcription factors TFIIA and TFIIB and leading to repression of RNA polymerase II transcription. The two subunits, NC2alpha (Drap1) and NC2beta (Dr1), dimerize through histone fold domains of the H2A/H2B type present in the amino termini.
8 P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI) P40096 (/IPI)