The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: V-type proton ATPase catalytic subunit A

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 7 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protease binding GO:0002020
Interacting selectively and non-covalently with any protease or peptidase.
3 O23654 (/IPI) O23654 (/IPI) O23654 (/IPI)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
3 P31405 (/IDA) P31405 (/IDA) P31405 (/IDA)
Proton transmembrane transporter activity GO:0015078
Enables the transfer of a proton from one side of a membrane to the other.
2 A2BEN1 (/IMP) Q7SY46 (/IMP)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
1 P54647 (/IPI)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
1 P31406 (/ISM)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
1 P54647 (/IDA)
Proton-transporting ATPase activity, rotational mechanism GO:0046961
Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
1 P31406 (/TAS)

There are 35 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Vacuolar acidification GO:0007035
Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion.
25 P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS)
(15 more)
Proton transmembrane transport GO:1902600
The directed movement of a proton across a membrane.
20 Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS) Q76NM6 (/ISS)
(10 more)
Cellular iron ion homeostasis GO:0006879
Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
6 P31404 (/ISS) P50516 (/ISS) Q29048 (/ISS) Q5R5H2 (/ISS) Q5R5H2 (/ISS) Q90647 (/ISS)
Cellular response to increased oxygen levels GO:0036295
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen.
6 P31404 (/ISS) P50516 (/ISS) Q29048 (/ISS) Q5R5H2 (/ISS) Q5R5H2 (/ISS) Q90647 (/ISS)
Proton transmembrane transport GO:1902600
The directed movement of a proton across a membrane.
6 Q27331 (/IC) Q27331 (/IC) Q27331 (/IC) Q27331 (/IC) Q8T464 (/IC) Q9VK47 (/IC)
Cellular iron ion homeostasis GO:0006879
Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
5 P38606 (/IMP) P38606 (/IMP) P38606 (/IMP) P38606 (/IMP) P38606 (/IMP)
Insulin receptor signaling pathway GO:0008286
The series of molecular signals generated as a consequence of the insulin receptor binding to insulin.
5 P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS)
Regulation of macroautophagy GO:0016241
Any process that modulates the frequency, rate or extent of macroautophagy.
5 P38606 (/NAS) P38606 (/NAS) P38606 (/NAS) P38606 (/NAS) P38606 (/NAS)
Transferrin transport GO:0033572
The directed movement of transferrin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
5 P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS)
Ion transmembrane transport GO:0034220
A process in which an ion is transported across a membrane.
5 P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS)
Cellular response to increased oxygen levels GO:0036295
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen.
5 P38606 (/IMP) P38606 (/IMP) P38606 (/IMP) P38606 (/IMP) P38606 (/IMP)
Cellular response to hypoxia GO:0071456
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
5 P48602 (/IMP) P48602 (/IMP) P48602 (/IMP) P48602 (/IMP) P48602 (/IMP)
Phagosome acidification GO:0090383
Any process that reduces the pH of the phagosome, measured by the concentration of the hydrogen ion.
5 P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS)
Imaginal disc growth GO:0007446
The increase in mass of imaginal discs by cell proliferation prior to metamorphosis. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.) during metamorphosis from larval to adult form.
4 Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP)
Endosomal transport GO:0016197
The directed movement of substances mediated by an endosome, a membrane-bounded organelle that carries materials enclosed in the lumen or located in the endosomal membrane.
4 Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP)
Lumen formation, open tracheal system GO:0035149
Creation of the central hole of a tube in an open tracheal system through which gases flow.
4 Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP)
Endosomal lumen acidification GO:0048388
Any process that reduces the pH of the endosomal lumen, measured by the concentration of the hydrogen ion.
4 Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP)
Golgi organization GO:0007030
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.
3 O23654 (/IMP) O23654 (/IMP) O23654 (/IMP)
Pollen development GO:0009555
The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
3 O23654 (/IMP) O23654 (/IMP) O23654 (/IMP)
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
3 O23654 (/IEP) O23654 (/IEP) O23654 (/IEP)
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
3 Q580D6 (/IMP) Q580D6 (/IMP) Q580D6 (/IMP)
Seed trichome initiation GO:0090377
The process in which the developmental fate of an epidermal cell becomes restricted such that it will develop into a seed trichome, causing a change in the orientation of cell division in the ovule epidermis at or just before anthesis.
3 P31405 (/IEP) P31405 (/IEP) P31405 (/IEP)
Seed trichome elongation GO:0090378
The process in which a seed trichome irreversibly increases in size in one
3 P31405 (/IEP) P31405 (/IEP) P31405 (/IEP)
Cellular calcium ion homeostasis GO:0006874
Any process involved in the maintenance of an internal steady state of calcium ions at the level of a cell.
2 A2BEN1 (/IMP) Q7SY46 (/IMP)
Cellular sodium ion homeostasis GO:0006883
Any process involved in the maintenance of an internal steady state of sodium ions at the level of a cell.
2 A2BEN1 (/IMP) Q7SY46 (/IMP)
Proton transmembrane transport GO:1902600
The directed movement of a proton across a membrane.
2 A2BEN1 (/IMP) Q7SY46 (/IMP)
Cellular iron ion homeostasis GO:0006879
Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
1 P50516 (/ISO)
Lysosomal lumen acidification GO:0007042
Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion.
1 Q9XW92 (/IMP)
Lysosomal lumen acidification GO:0007042
Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion.
1 Q61VZ4 (/ISS)
Response to bacterium GO:0009617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
1 P54647 (/HEP)
Cellular response to increased oxygen levels GO:0036295
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen.
1 P50516 (/ISO)
Lysine homeostasis GO:0090463
Any process involved in the maintenance of an internal steady state of lysine within an organism or cell.
1 P31406 (/IMP)
Histidine homeostasis GO:0090464
Any process involved in the maintenance of an internal steady state of histidine within an organism or cell.
1 P31406 (/IMP)
Arginine homeostasis GO:0090465
Any process involved in the maintenance of an internal steady state of arginine within an organism or cell.
1 P31406 (/IMP)
Proton transmembrane transport GO:1902600
The directed movement of a proton across a membrane.
1 P31406 (/ISM)

There are 36 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Apical plasma membrane GO:0016324
The region of the plasma membrane located at the apical end of the cell.
31 A0A060WNR9 (/ISS) A0A060WNR9 (/ISS) A0A060YAA2 (/ISS) A0A087XVC2 (/ISS) A0A087YN28 (/ISS) A0A087YN28 (/ISS) A2BEN1 (/ISS) A9EF05 (/ISS) A9EF05 (/ISS) B5X161 (/ISS)
(21 more)
Vacuolar proton-transporting V-type ATPase, V1 domain GO:0000221
The V1 domain of a proton-transporting V-type ATPase found in the vacuolar membrane.
29 P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) Q27331 (/ISS) Q27331 (/ISS) Q27331 (/ISS) Q27331 (/ISS) Q76NM6 (/ISS)
(19 more)
Food vacuole GO:0020020
Vacuole within a parasite used for digestion of the host cell cytoplasm. An example of this component is found in the Apicomplexa.
20 Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA) Q76NM6 (/IDA)
(10 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
9 P31404 (/ISS) P38606 (/ISS) P38606 (/ISS) P38606 (/ISS) P38606 (/ISS) P38606 (/ISS) Q29048 (/ISS) Q5R5H2 (/ISS) Q5R5H2 (/ISS)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
9 P31404 (/ISS) P38606 (/ISS) P38606 (/ISS) P38606 (/ISS) P38606 (/ISS) P38606 (/ISS) Q29048 (/ISS) Q5R5H2 (/ISS) Q5R5H2 (/ISS)
Proton-transporting V-type ATPase complex GO:0033176
A proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across a concentration gradient. The resulting transmembrane electrochemical potential of H+ is used to drive a variety of (i) secondary active transport systems via H+-dependent symporters and antiporters and (ii) channel-mediated transport systems. The complex comprises a membrane sector (V0) that carries out proton transport and a cytoplasmic compartment sector (V1) that catalyzes ATP hydrolysis. V-type ATPases are found in the membranes of organelles such as vacuoles, endosomes, and lysosomes, and in the plasma membrane.
7 P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) P48602 (/ISS) Q8T464 (/ISS) Q9VK47 (/ISS)
Lysosomal membrane GO:0005765
The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
5 P38606 (/HDA) P38606 (/HDA) P38606 (/HDA) P38606 (/HDA) P38606 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
5 P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
5 P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS)
Proton-transporting two-sector ATPase complex GO:0016469
A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible.
5 P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS) P38606 (/TAS)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
5 P38606 (/HDA) P38606 (/HDA) P38606 (/HDA) P38606 (/HDA) P38606 (/HDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
4 Q27331 (/HDA) Q27331 (/HDA) Q27331 (/HDA) Q27331 (/HDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
4 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA) P50516 (/IDA)
Plasma membrane proton-transporting V-type ATPase complex GO:0033181
A proton-transporting two-sector ATPase complex found in the plasma membrane.
4 Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP) Q27331 (/IMP)
Plant-type vacuole GO:0000325
A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Vacuole GO:0005773
A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Vacuolar membrane GO:0005774
The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Plant-type vacuole membrane GO:0009705
The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana.
3 P31405 (/IDA) P31405 (/IDA) P31405 (/IDA)
Chloroplast envelope GO:0009941
The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Apoplast GO:0048046
The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
3 O23654 (/IDA) O23654 (/IDA) O23654 (/IDA)
Apical plasma membrane GO:0016324
The region of the plasma membrane located at the apical end of the cell.
2 A0A060XSR8 (/IDA) P50516 (/IDA)
Vacuolar proton-transporting V-type ATPase, V1 domain GO:0000221
The V1 domain of a proton-transporting V-type ATPase found in the vacuolar membrane.
1 P31406 (/ISO)
Contractile vacuole GO:0000331
A specialized vacuole of eukaryotic cells, especially Protozoa, that fills with water from the cytoplasm and then discharges this externally by the opening of contractile vacuole pores. Its function is probably osmoregulatory.
1 P54647 (/IDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
1 P50516 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 P31406 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 P50516 (/IDA)
Microvillus GO:0005902
Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells.
1 P50516 (/IDA)
Endocytic vesicle GO:0030139
A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting.
1 P54647 (/IDA)
Myelin sheath GO:0043209
An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
1 P50516 (/HDA)
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
1 P54647 (/HDA)
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
1 P54647 (/IDA)