The name of this superfamily has been modified since the most recent official CATH+ release (v4_2_0). At the point of the last release, this superfamily was named:
"Zinc/RING finger domain, C3HC4 (zinc finger)
".
FunFam 60837: Histone lysine demethylase PHF8
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 39 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Histone demethylase activity (H3-K9 specific) GO:0032454
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein.
|
7 | E6ZGB4 (/ISS) P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q5RHD1 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Histone demethylase activity (H3-K9 specific) GO:0032454
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein.
|
6 | A0A0R4IAC4 (/IDA) A0A0R4IPR3 (/IDA) F1QHF6 (/IDA) O75151 (/IDA) Q5RHD1 (/IDA) Q6ZMT4 (/IDA) |
Methylated histone binding GO:0035064
Interacting selectively and non-covalently with a histone protein in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes.
|
6 | E6ZGB4 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q3UWM4 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Iron ion binding GO:0005506
Interacting selectively and non-covalently with iron (Fe) ions.
|
5 | E6ZGB4 (/ISS) Q08D35 (/ISS) Q3UWM4 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Histone demethylase activity (H4-K20 specific) GO:0035575
Catalysis of the reaction: histone H4 N6-methyl-L-lysine (position 20) + 2-oxoglutarate + O2 = histone H4 L-lysine (position 20) + succinate + formaldehyde + CO2. This reaction is the removal of a methyl group from lysine at position 20 of the histone H4 protein.
|
5 | P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q3UWM4 (/ISS) Q5RHD1 (/ISS) |
Histone demethylase activity (H3-K36 specific) GO:0051864
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 36) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 36 of the histone H3 protein.
|
5 | P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q3UWM4 (/ISS) Q5RHD1 (/ISS) |
Histone demethylase activity (H3-K27 specific) GO:0071558
Catalysis of the removal of a methyl group from lysine at position 27 of the histone H3 protein.
|
5 | A0A0R4IAC4 (/IDA) A0A0R4IPR3 (/IDA) F1QHF6 (/IDA) Q5RHD1 (/IDA) Q6ZMT4 (/IDA) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
4 | Q08D35 (/ISS) Q3UWM4 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors GO:0016706
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
|
4 | P0CF52 (/ISS) Q08D35 (/ISS) Q3UWM4 (/ISS) Q5RHD1 (/ISS) |
Histone demethylase activity (H3-K27 specific) GO:0071558
Catalysis of the removal of a methyl group from lysine at position 27 of the histone H3 protein.
|
4 | P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q5RHD1 (/ISS) |
Methylated histone binding GO:0035064
Interacting selectively and non-covalently with a histone protein in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes.
|
3 | O75151 (/IDA) Q6ZMT4 (/IDA) Q9W0T1 (/IDA) |
Iron ion binding GO:0005506
Interacting selectively and non-covalently with iron (Fe) ions.
|
2 | O75151 (/IDA) Q6ZMT4 (/IDA) |
Iron ion binding GO:0005506
Interacting selectively and non-covalently with iron (Fe) ions.
|
2 | Q3UWM4 (/ISO) Q9WTU0 (/ISO) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
2 | O75151 (/IPI) Q12830 (/IPI) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
2 | O75151 (/IDA) Q6ZMT4 (/IDA) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
2 | Q3UWM4 (/ISO) Q9WTU0 (/ISO) |
Histone demethylase activity GO:0032452
Catalysis of the removal of a methyl group from a histone.
|
2 | O75151 (/TAS) Q6ZMT4 (/TAS) |
Histone demethylase activity (H3-K9 specific) GO:0032454
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein.
|
2 | Q3UWM4 (/ISO) Q9WTU0 (/ISO) |
Methylated histone binding GO:0035064
Interacting selectively and non-covalently with a histone protein in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes.
|
2 | Q3UWM4 (/ISO) Q9WTU0 (/ISO) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
1 | P0CH95 (/ISS) |
Iron ion binding GO:0005506
Interacting selectively and non-covalently with iron (Fe) ions.
|
1 | Q6ZMT4 (/TAS) |
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
|
1 | Q12830 (/IDA) |
Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors GO:0016706
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
|
1 | Q6ZMT4 (/IDA) |
Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors GO:0016706
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
|
1 | Q3UWM4 (/ISO) |
Ligand-dependent nuclear receptor binding GO:0016922
Interacting selectively and non-covalently, in a ligand dependent manner, with a nuclear receptor protein.
|
1 | Q9W0T1 (/IPI) |
Histone demethylase activity (H3-K9 specific) GO:0032454
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein.
|
1 | Q3UWM4 (/IMP) |
Histone demethylase activity (H3-K9 specific) GO:0032454
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein.
|
1 | Q9WTU0 (/TAS) |
Histone demethylase activity (H4-K20 specific) GO:0035575
Catalysis of the reaction: histone H4 N6-methyl-L-lysine (position 20) + 2-oxoglutarate + O2 = histone H4 L-lysine (position 20) + succinate + formaldehyde + CO2. This reaction is the removal of a methyl group from lysine at position 20 of the histone H4 protein.
|
1 | Q6ZMT4 (/IDA) |
Histone demethylase activity (H4-K20 specific) GO:0035575
Catalysis of the reaction: histone H4 N6-methyl-L-lysine (position 20) + 2-oxoglutarate + O2 = histone H4 L-lysine (position 20) + succinate + formaldehyde + CO2. This reaction is the removal of a methyl group from lysine at position 20 of the histone H4 protein.
|
1 | Q3UWM4 (/ISO) |
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | Q12830 (/IDA) |
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | Q12830 (/IMP) |
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | Q6P9L3 (/ISS) |
Histone demethylase activity (H3-K36 specific) GO:0051864
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 36) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 36 of the histone H3 protein.
|
1 | Q6ZMT4 (/IDA) |
Histone demethylase activity (H3-K36 specific) GO:0051864
Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 36) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 36 of the histone H3 protein.
|
1 | Q3UWM4 (/ISO) |
Lysine-acetylated histone binding GO:0070577
Interacting selectively and non-covalently with a histone in which a lysine residue has been modified by acetylation.
|
1 | Q9W0T1 (/IDA) |
Histone demethylase activity (H3-K27 specific) GO:0071558
Catalysis of the removal of a methyl group from lysine at position 27 of the histone H3 protein.
|
1 | Q3UWM4 (/IMP) |
Histone demethylase activity (H3-K27 specific) GO:0071558
Catalysis of the removal of a methyl group from lysine at position 27 of the histone H3 protein.
|
1 | Q3UWM4 (/ISO) |
There are 67 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of transcription from RNA polymerase II promoter GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Embryonic placenta development GO:0001892
The embryonically driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin.
|
8 | A0A140LHY5 (/IMP) A0A140LHY5 (/IMP) A2A654 (/IMP) A2A655 (/IMP) E5D6T0 (/IMP) E9Q6A7 (/IMP) Q3TMJ3 (/IMP) Q6P9L3 (/IMP) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Endoderm development GO:0007492
The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.
|
8 | A0A140LHY5 (/IMP) A0A140LHY5 (/IMP) A2A654 (/IMP) A2A655 (/IMP) E5D6T0 (/IMP) E9Q6A7 (/IMP) Q3TMJ3 (/IMP) Q6P9L3 (/IMP) |
Anterior/posterior pattern specification GO:0009952
The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
|
8 | A0A140LHY5 (/IMP) A0A140LHY5 (/IMP) A2A654 (/IMP) A2A655 (/IMP) E5D6T0 (/IMP) E9Q6A7 (/IMP) Q3TMJ3 (/IMP) Q6P9L3 (/IMP) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Histone H3-K9 demethylation GO:0033169
The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone.
|
6 | A0A0R4IAC4 (/IDA) A0A0R4IPR3 (/IDA) F1QHF6 (/IDA) Q5RHD1 (/IDA) Q6ZMT4 (/IDA) Q9WTU0 (/IDA) |
Histone H4-K20 demethylation GO:0035574
The modification of histone H4 by the removal of a methyl group from lysine at position 20 of the histone.
|
5 | P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q3UWM4 (/ISS) Q5RHD1 (/ISS) |
Histone H3-K36 demethylation GO:0070544
The modification of histone H3 by the removal of a methyl group from lysine at position 36 of the histone.
|
5 | P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q3UWM4 (/ISS) Q5RHD1 (/ISS) |
Histone H3-K27 demethylation GO:0071557
The modification of histone H3 by the removal of a methyl group from lysine at position 27 of the histone.
|
5 | A0A0R4IAC4 (/IDA) A0A0R4IPR3 (/IDA) F1QHF6 (/IDA) Q5RHD1 (/IDA) Q6ZMT4 (/IDA) |
Response to wounding GO:0009611
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
|
4 | A0A0G2K7N8 (/IEP) A0A0G2K7N8 (/IEP) B1H2A3 (/IEP) B1H2A3 (/IEP) |
Midbrain development GO:0030901
The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles).
|
4 | A0A0R4IAC4 (/IGI) A0A0R4IPR3 (/IGI) F1QHF6 (/IGI) Q5RHD1 (/IGI) |
Histone H3-K9 demethylation GO:0033169
The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone.
|
4 | P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q5RHD1 (/ISS) |
Histone H3-K27 demethylation GO:0071557
The modification of histone H3 by the removal of a methyl group from lysine at position 27 of the histone.
|
4 | P0CF52 (/ISS) P0CH95 (/ISS) Q08D35 (/ISS) Q5RHD1 (/ISS) |
Cellular response to nerve growth factor stimulus GO:1990090
A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus.
|
4 | A0A0G2K7N8 (/IEP) A0A0G2K7N8 (/IEP) B1H2A3 (/IEP) B1H2A3 (/IEP) |
Protein demethylation GO:0006482
The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
|
3 | E6ZGB4 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Midbrain development GO:0030901
The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles).
|
3 | Q08D35 (/ISS) Q3UWM4 (/ISS) Q6ZMT4 (/ISS) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
3 | P0CH95 (/IMP) Q12830 (/IMP) Q3UWM4 (/IMP) |
Negative regulation of chromatin silencing at rDNA GO:0061188
Any process that decreases the rate, frequency, or extent of the repression of transcription of ribosomal DNA by altering the structure of chromatin.
|
3 | P0CH95 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
2 | Q12830 (/IMP) Q9W0T1 (/IMP) |
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
|
2 | P0CH95 (/IMP) Q12830 (/IMP) |
Midbrain development GO:0030901
The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles).
|
2 | P0CF52 (/IMP) Q5RHD1 (/IMP) |
G1/S transition of mitotic cell cycle GO:0000082
The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated.
|
1 | P0CH95 (/ISS) |
Negative regulation of transcription from RNA polymerase II promoter GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
1 | Q12830 (/IDA) |
Liver development GO:0001889
The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
|
1 | O75151 (/TAS) |
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
|
1 | Q9W0T1 (/IMP) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
1 | Q12830 (/IDA) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
1 | Q9W0T1 (/IMP) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
1 | Q6P9L3 (/ISS) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
1 | Q9W0T1 (/IDA) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
1 | Q6P9L3 (/ISS) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | Q12830 (/IMP) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | Q6P9L3 (/ISS) |
Regulation of transcription from RNA polymerase II promoter GO:0006357
Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
1 | Q9W0T1 (/IMP) |
Protein demethylation GO:0006482
The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
|
1 | O75151 (/IDA) |
Protein demethylation GO:0006482
The removal of a methyl group, from a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
|
1 | Q9WTU0 (/ISO) |
Mitotic G2 DNA damage checkpoint GO:0007095
A mitotic cell cycle checkpoint that detects and negatively regulates progression through the G2/M transition of the cell cycle in response to DNA damage.
|
1 | Q9W0T1 (/IGI) |
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
|
1 | Q6P9L3 (/ISS) |
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
1 | Q9W0T1 (/IMP) |
Hemopoiesis GO:0030097
The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
|
1 | Q9W0T1 (/IMP) |
Histone H3-K9 demethylation GO:0033169
The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone.
|
1 | Q3UWM4 (/IMP) |
Histone H3-K9 demethylation GO:0033169
The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone.
|
1 | Q3UWM4 (/ISO) |
Pupariation GO:0035073
The onset of prepupal development when the larval stops crawling, everts its spiracles and the larval cuticle becomes the puparium or pupal case that surrounds the organism for the duration of metamorphosis.
|
1 | Q9W0T1 (/IMP) |
Ecdysone receptor-mediated signaling pathway GO:0035076
The series of molecular signals generated by ecdysone binding to the ecdysone receptor complex.
|
1 | Q9W0T1 (/IGI) |
Histone H4-K20 demethylation GO:0035574
The modification of histone H4 by the removal of a methyl group from lysine at position 20 of the histone.
|
1 | Q6ZMT4 (/IDA) |
Histone H4-K20 demethylation GO:0035574
The modification of histone H4 by the removal of a methyl group from lysine at position 20 of the histone.
|
1 | Q3UWM4 (/ISO) |
Nucleosome mobilization GO:0042766
The movement of nucleosomes along a DNA fragment.
|
1 | Q9W0T1 (/IDA) |
Nucleosome mobilization GO:0042766
The movement of nucleosomes along a DNA fragment.
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1 | Q9W0T1 (/TAS) |
Positive regulation of Notch signaling pathway GO:0045747
Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway.
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1 | Q9W0T1 (/IGI) |
Positive regulation of Notch signaling pathway GO:0045747
Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway.
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1 | Q9W0T1 (/IMP) |
Negative regulation of innate immune response GO:0045824
Any process that stops, prevents, or reduces the frequency, rate or extent of the innate immune response.
|
1 | Q9W0T1 (/IMP) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | P0CH95 (/ISS) |
Positive regulation of transcription from RNA polymerase I promoter GO:0045943
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase I promoter.
|
1 | P0CH95 (/ISS) |
Positive regulation of transcription from RNA polymerase II promoter GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
1 | Q6BER5 (/IMP) |
Lateral inhibition GO:0046331
Signaling between cells of equivalent developmental potential that results in these cells adopting different developmental fates. An example is the suppression by cells with a particular fate of the adoption of the same fate by surrounding cells.
|
1 | Q9W0T1 (/IMP) |
Negative regulation of JAK-STAT cascade GO:0046426
Any process that stops, prevents, or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity.
|
1 | Q9W0T1 (/IMP) |
Spermatid differentiation GO:0048515
The process whose specific outcome is the progression of a spermatid over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.
|
1 | Q9W0T1 (/IMP) |
Dendrite morphogenesis GO:0048813
The process in which the anatomical structures of a dendrite are generated and organized. A dendrite is a freely branching protoplasmic process of a nerve cell.
|
1 | Q9W0T1 (/IMP) |
Negative regulation of chromatin silencing at rDNA GO:0061188
Any process that decreases the rate, frequency, or extent of the repression of transcription of ribosomal DNA by altering the structure of chromatin.
|
1 | O75151 (/IMP) |
Negative regulation of chromatin silencing at rDNA GO:0061188
Any process that decreases the rate, frequency, or extent of the repression of transcription of ribosomal DNA by altering the structure of chromatin.
|
1 | Q9WTU0 (/ISO) |
Histone H3-K36 demethylation GO:0070544
The modification of histone H3 by the removal of a methyl group from lysine at position 36 of the histone.
|
1 | Q6ZMT4 (/IDA) |
Histone H3-K36 demethylation GO:0070544
The modification of histone H3 by the removal of a methyl group from lysine at position 36 of the histone.
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1 | Q3UWM4 (/ISO) |
Histone H3-K27 demethylation GO:0071557
The modification of histone H3 by the removal of a methyl group from lysine at position 27 of the histone.
|
1 | Q3UWM4 (/IMP) |
Histone H3-K27 demethylation GO:0071557
The modification of histone H3 by the removal of a methyl group from lysine at position 27 of the histone.
|
1 | Q3UWM4 (/ISO) |
There are 29 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) Q9WTU0 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
9 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q3UWM4 (/ISO) Q6P9L3 (/ISO) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
NURF complex GO:0016589
An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2L in mammals), a NURF301 homolog (BPTF in humans), and additional subunits, though the composition of these additional subunits varies slightly with species. NURF is involved in regulation of transcription from TRNA polymerase II promoters.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
8 | A0A140LHY5 (/ISO) A0A140LHY5 (/ISO) A2A654 (/ISO) A2A655 (/ISO) E5D6T0 (/ISO) E9Q6A7 (/ISO) Q3TMJ3 (/ISO) Q6P9L3 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | A0A0G2K7N8 (/IDA) A0A0G2K7N8 (/IDA) B1H2A3 (/IDA) B1H2A3 (/IDA) O75151 (/IDA) Q12830 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
4 | A0A0G2K7N8 (/IDA) A0A0G2K7N8 (/IDA) B1H2A3 (/IDA) B1H2A3 (/IDA) |
Dendrite GO:0030425
A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
|
4 | A0A0G2K7N8 (/IDA) A0A0G2K7N8 (/IDA) B1H2A3 (/IDA) B1H2A3 (/IDA) |
Neuron projection GO:0043005
A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
|
4 | A0A0G2K7N8 (/IDA) A0A0G2K7N8 (/IDA) B1H2A3 (/IDA) B1H2A3 (/IDA) |
Cell body GO:0044297
The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.
|
4 | A0A0G2K7N8 (/IDA) A0A0G2K7N8 (/IDA) B1H2A3 (/IDA) B1H2A3 (/IDA) |
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
|
4 | A0A0G2K7N8 (/IDA) A0A0G2K7N8 (/IDA) B1H2A3 (/IDA) B1H2A3 (/IDA) |
Kinetochore GO:0000776
A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
|
3 | E6ZGB4 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
3 | E7ETD6 (/IDA) Q12830 (/IDA) Q6ZMT4 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
3 | P0CH95 (/ISS) Q6P949 (/ISS) Q9WTU0 (/ISS) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
2 | O75151 (/TAS) Q6ZMT4 (/TAS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | O75151 (/IDA) Q6ZMT4 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | Q3UWM4 (/ISO) Q9WTU0 (/ISO) |
NURF complex GO:0016589
An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2L in mammals), a NURF301 homolog (BPTF in humans), and additional subunits, though the composition of these additional subunits varies slightly with species. NURF is involved in regulation of transcription from TRNA polymerase II promoters.
|
2 | Q12830 (/IDA) Q9W0T1 (/IDA) |
Kinetochore GO:0000776
A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
|
1 | O75151 (/IDA) |
Kinetochore GO:0000776
A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
|
1 | Q9WTU0 (/ISO) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
1 | Q12830 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q6ZMT4 (/IC) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q6P9L3 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O75151 (/TAS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q12830 (/TAS) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O75151 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q9WTU0 (/ISO) |
NURF complex GO:0016589
An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2L in mammals), a NURF301 homolog (BPTF in humans), and additional subunits, though the composition of these additional subunits varies slightly with species. NURF is involved in regulation of transcription from TRNA polymerase II promoters.
|
1 | Q9W0T1 (/TAS) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
1 | Q12830 (/IDA) |