CATH Superfamily 2.160.20.10
Single-stranded right-handed beta-helix, Pectin lyase-like
The name of this superfamily has been modified since the most recent official CATH+ release (v4_2_0). At the point of the last release, this superfamily was named:
"Single-stranded right-handed beta-helix, Pectin lyase-like
".
FunFam 22212: Probable pectate lyase C
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Pectin lyase activity GO:0047490
Catalysis of the reaction: a pectin = an oligosaccharide with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronate end + a pectin. This reaction is the eliminative cleavage of (1->4)-alpha-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronosyl groups at their nonreducing ends.
|
28 |
A1CFS2 (/ISS)
A1CYC2 (/ISS)
A1DEH0 (/ISS)
A2QFN7 (/ISS)
A2QW65 (/ISS)
A2R3I1 (/ISS)
A2R6A1 (/ISS)
A2RBL2 (/ISS)
B0XT36 (/ISS)
B0Y0L8 (/ISS)
(18 more) |
|
Pectin lyase activity GO:0047490
Catalysis of the reaction: a pectin = an oligosaccharide with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronate end + a pectin. This reaction is the eliminative cleavage of (1->4)-alpha-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronosyl groups at their nonreducing ends.
|
6 | A2R3I1 (/IDA) A2RBL2 (/IDA) Q2TWM1 (/IDA) Q2TXS4 (/IDA) Q5BA61 (/IDA) Q5BAU9 (/IDA) |
|
Pectate lyase activity GO:0030570
Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends.
|
3 | Q87XA5 (/ISS) Q93Z04 (/ISS) Q9M9S2 (/ISS) |
|
Pectate lyase activity GO:0030570
Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends.
|
1 | Q4JLV6 (/IDA) |
|
Pectin lyase activity GO:0047490
Catalysis of the reaction: a pectin = an oligosaccharide with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronate end + a pectin. This reaction is the eliminative cleavage of (1->4)-alpha-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronosyl groups at their nonreducing ends.
|
1 | A2R3I1 (/IMP) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Pectin catabolic process GO:0045490
The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
|
28 |
A1CFS2 (/ISS)
A1CYC2 (/ISS)
A1DEH0 (/ISS)
A2QFN7 (/ISS)
A2QW65 (/ISS)
A2R3I1 (/ISS)
A2R6A1 (/ISS)
A2RBL2 (/ISS)
B0XT36 (/ISS)
B0Y0L8 (/ISS)
(18 more) |
|
Pectin catabolic process GO:0045490
The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
|
6 | A2R3I1 (/IDA) Q2TWM1 (/IDA) Q2TXS4 (/IDA) Q4JLV6 (/IDA) Q5BA61 (/IDA) Q5BAU9 (/IDA) |
|
Response to nematode GO:0009624
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
|
2 | Q9C5M8 (/IMP) Q9LTZ0 (/IMP) |
|
Plant-type cell wall organization GO:0009664
A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.
|
1 | Q9M9S2 (/TAS) |
|
Defense response, incompatible interaction GO:0009814
A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease.
|
1 | Q93Z04 (/IMP) |
|
Cell wall modification involved in multidimensional cell growth GO:0042547
The series of events resulting in chemical or structural changes to existing cell walls and contribute to multidimensional cell growth.
|
1 | Q93Z04 (/IMP) |
|
Pectin metabolic process GO:0045488
The chemical reactions and pathways involving pectin, a group of galacturonic acid-containing, water-soluble colloidal carbohydrates of high molecular weight and of net negative charge.
|
1 | Q87XA5 (/ISS) |
|
Pectin catabolic process GO:0045490
The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
|
1 | A2R3I1 (/IMP) |
|
Seed trichome elongation GO:0090378
The process in which a seed trichome irreversibly increases in size in one
|
1 | Q4JLV6 (/IEP) |
|
Seed trichome elongation GO:0090378
The process in which a seed trichome irreversibly increases in size in one
|
1 | Q4JLV6 (/IMP) |
There are 5 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Anchored component of membrane GO:0031225
The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
|
3 | F4JW80 (/TAS) Q93Z04 (/TAS) Q9SCP2 (/TAS) |
|
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
|
2 | Q2TWM1 (/IDA) Q2TXS4 (/IDA) |
|
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
2 | Q940Q1 (/IDA) Q9C5M8 (/IDA) |
|
Primary cell wall GO:0009530
A plant cell wall that is still able to expand, permitting cell growth. Primary cell walls contain more pectin than secondary walls and no lignin is present.
|
1 | Q4JLV6 (/TAS) |
|
Anchored component of plasma membrane GO:0046658
The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
|
1 | Q93Z04 (/ISS) |
