CATH Superfamily 2.160.20.10
Single-stranded right-handed beta-helix, Pectin lyase-like
The name of this superfamily has been modified since the most recent official CATH+ release (v4_2_0). At the point of the last release, this superfamily was named:
"Single-stranded right-handed beta-helix, Pectin lyase-like
".
FunFam 22124: Polygalacturonase family protein, expressed
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Polygalacturonase activity GO:0004650
Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
|
49 |
A1CIV8 (/ISS)
A1CVV8 (/ISS)
A1D145 (/ISS)
A1DAQ2 (/ISS)
A1DAX2 (/ISS)
A1DBR6 (/ISS)
A1DLC1 (/ISS)
A2QAH3 (/ISS)
A2QBB6 (/ISS)
A2QCV8 (/ISS)
(39 more) |
|
Polygalacturonase activity GO:0004650
Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
|
16 |
A2QW66 (/IDA)
F4IA77 (/IDA)
O23147 (/IDA)
P35335 (/IDA)
P47180 (/IDA)
Q2UHL4 (/IDA)
Q38958 (/IDA)
Q4WBT4 (/IDA)
Q5ARN5 (/IDA)
Q5ASG9 (/IDA)
(6 more) |
|
Galacturan 1,4-alpha-galacturonidase activity GO:0047911
Catalysis of the reaction:
|
6 | A1CIV8 (/ISS) A2QAH3 (/ISS) A2R8F8 (/ISS) B8N8M2 (/ISS) Q0CMU3 (/ISS) Q2UHL4 (/ISS) |
|
Galacturan 1,4-alpha-galacturonidase activity GO:0047911
Catalysis of the reaction:
|
3 | P35335 (/IDA) Q2UHL4 (/IDA) Q6H9K0 (/IDA) |
|
Polygalacturonase activity GO:0004650
Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
|
1 | Q5B508 (/RCA) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
1 | Q94AJ5 (/IPI) |
|
Hydrolase activity, acting on glycosyl bonds GO:0016798
Catalysis of the hydrolysis of any glycosyl bond.
|
1 | A2QW66 (/IDA) |
|
IgE binding GO:0019863
Interacting selectively and non-covalently with an immunoglobulin of the IgE isotype.
|
1 | Q6H9K0 (/IDA) |
There are 19 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Pectin catabolic process GO:0045490
The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
|
48 |
A1CIV8 (/ISS)
A1CVV8 (/ISS)
A1D145 (/ISS)
A1DAQ2 (/ISS)
A1DAX2 (/ISS)
A1DBR6 (/ISS)
A1DLC1 (/ISS)
A2QAH3 (/ISS)
A2QBB6 (/ISS)
A2QCV8 (/ISS)
(38 more) |
|
Pectin catabolic process GO:0045490
The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
|
11 |
P35335 (/IDA)
P47180 (/IDA)
Q2UHL4 (/IDA)
Q4WBT4 (/IDA)
Q5ARN5 (/IDA)
Q5ASG9 (/IDA)
Q5ATQ3 (/IDA)
Q5B508 (/IDA)
Q6H9K0 (/IDA)
Q9P358 (/IDA)
(1 more) |
|
Cell wall modification involved in abscission GO:0009830
A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission.
|
3 | O23147 (/TAS) Q8RY29 (/TAS) Q9SFB7 (/TAS) |
|
Anther dehiscence GO:0009901
The dehiscence of an anther to release the pollen grains contained within it.
|
3 | O23147 (/IMP) Q8RY29 (/IMP) Q9SFB7 (/IMP) |
|
Fruit dehiscence GO:0010047
The process leading to the spontaneous opening of the fruit permitting the escape of seeds.
|
3 | O23147 (/IMP) Q8RY29 (/IMP) Q9SFB7 (/IMP) |
|
Pectin catabolic process GO:0045490
The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
|
2 | Q38958 (/IMP) Q9SFB7 (/IMP) |
|
Pseudohyphal growth GO:0007124
A pattern of cell growth that occurs in conditions of nitrogen limitation and abundant fermentable carbon source. Cells become elongated, switch to a unipolar budding pattern, remain physically attached to each other, and invade the growth substrate.
|
1 | P47180 (/NAS) |
|
Embryo development ending in seed dormancy GO:0009793
The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
|
1 | O49319 (/IMP) |
|
Unidimensional cell growth GO:0009826
The process in which a cell irreversibly increases in size in one
|
1 | Q38958 (/IMP) |
|
Plant-type secondary cell wall biogenesis GO:0009834
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.
|
1 | F4IA77 (/IMP) |
|
Suspensor development GO:0010098
The process whose specific outcome is the progression of the suspensor over time, from its formation to the mature structure. The suspensor is the extension at the base of the embryo that anchors the embryo in the embryo sac and pushes it into the endosperm.
|
1 | O49319 (/IMP) |
|
Floral organ abscission GO:0010227
The controlled shedding of floral organs.
|
1 | Q8RY29 (/IMP) |
|
Carbohydrate catabolic process GO:0016052
The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
|
1 | A2QW66 (/IDA) |
|
Galacturonate metabolic process GO:0019586
The chemical reactions and pathways involving galacturonate, the anion of galacturonic acid, the uronic acid formally derived from galactose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group.
|
1 | Q5B508 (/RCA) |
|
Pollen sperm cell differentiation GO:0048235
The process in which a relatively unspecialized cell acquires specialized features of a haploid sperm cell within the plant gametophyte.
|
1 | Q9SFB7 (/IMP) |
|
Root cap development GO:0048829
The process whose specific outcome is the progression of the root cap over time, from its formation to the mature structure. The root cap protects the root meristem from friction as the root grows through the soil. The cap is made up of a group of parenchyma cells which secrete a glycoprotein mucilage as a lubricant.
|
1 | O04474 (/IMP) |
|
Cell wall pectin metabolic process GO:0052546
The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall.
|
1 | Q38958 (/IMP) |
|
Flower phyllotactic patterning GO:0060773
The radial pattern formation process that results in the formation of floral organ primordia around a central axis in a flower primordium.
|
1 | Q38958 (/IMP) |
|
Zygote elongation GO:0080159
The process in which the zygote irreversibly increases in size in one dimension after fertilization. An example of such a process is found in Arabidopsis thaliana.
|
1 | O49319 (/IMP) |
There are 8 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
|
49 |
A1CIV8 (/ISS)
A1CVV8 (/ISS)
A1D145 (/ISS)
A1DAQ2 (/ISS)
A1DAX2 (/ISS)
A1DBR6 (/ISS)
A1DLC1 (/ISS)
A2QAH3 (/ISS)
A2QBB6 (/ISS)
A2QCV8 (/ISS)
(39 more) |
|
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
|
4 | P35335 (/IDA) P47180 (/IDA) Q2UHL4 (/IDA) Q9P359 (/IDA) |
|
Plant-type cell wall GO:0009505
A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances.
|
3 | Q94AJ5 (/IDA) Q9LW07 (/IDA) Q9SFD1 (/IDA) |
|
Apoplast GO:0048046
The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
|
2 | O04474 (/IDA) Q38958 (/IDA) |
|
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
1 | O49319 (/IDA) |
|
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
1 | O04474 (/IDA) |
|
Anchored component of membrane GO:0031225
The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
|
1 | Q9LW07 (/TAS) |
|
Anchored component of plasma membrane GO:0046658
The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
|
1 | Q9LW07 (/IDA) |
