The name of this superfamily has been modified since the most recent official CATH+ release (v4_2_0). At the point of the last release, this superfamily was named:
"Homeodomain-like
".
FunFam 124224: MYB transcription factor Atmyb2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 9 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Transcription factor activity, sequence-specific DNA binding GO:0003700
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
|
14 |
O80883 (/ISS)
Q39028 (/ISS)
Q94CJ3 (/ISS)
Q94FL7 (/ISS)
Q94FU0 (/ISS)
Q9C9G7 (/ISS)
Q9FGY3 (/ISS)
Q9LDE1 (/ISS)
Q9LTJ5 (/ISS)
Q9S773 (/ISS)
(4 more) |
Transcription factor activity, sequence-specific DNA binding GO:0003700
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
|
4 | A0A178VEK7 (/IDA) O80883 (/IDA) Q94FL7 (/IDA) Q9S773 (/IDA) |
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
4 | Q39028 (/IPI) Q94CJ3 (/IPI) Q9FGY3 (/IPI) Q9LDE1 (/IPI) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
3 | Q9LK95 (/IPI) Q9SPG9 (/IPI) Q9SSA1 (/IPI) |
Core promoter sequence-specific DNA binding GO:0001046
Interacting selectively and non-covalently with a sequence of DNA that is part of a core promoter region composed of the transcription start site and binding sites for the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.
|
1 | Q39028 (/IDA) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | Q39028 (/IDA) |
Transcription factor activity, sequence-specific DNA binding GO:0003700
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
|
1 | O80883 (/TAS) |
Calmodulin binding GO:0005516
Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
|
1 | Q39028 (/IDA) |
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | A0A178VEK7 (/IDA) |
There are 41 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
|
4 | Q39028 (/IEP) Q94CJ3 (/IEP) Q9FGY3 (/IEP) Q9LDE1 (/IEP) |
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
4 | Q39028 (/IEP) Q94CJ3 (/IEP) Q9FGY3 (/IEP) Q9LDE1 (/IEP) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | O80883 (/IDA) Q39028 (/IDA) Q94FL7 (/IDA) Q9S773 (/IDA) |
Pollen sperm cell differentiation GO:0048235
The process in which a relatively unspecialized cell acquires specialized features of a haploid sperm cell within the plant gametophyte.
|
4 | A0A178VEK7 (/IMP) O80883 (/IMP) Q94FL7 (/IMP) Q9S773 (/IMP) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
3 | O49020 (/TAS) Q94FU0 (/TAS) Q9S773 (/TAS) |
Gibberellic acid mediated signaling pathway GO:0009740
A series of molecular signals mediated by the detection of gibberellic acid.
|
3 | Q9LK95 (/IEP) Q9SPG9 (/IEP) Q9SSA1 (/IEP) |
Response to salicylic acid GO:0009751
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
|
3 | Q39028 (/IEP) Q94CJ3 (/IEP) Q9C9G7 (/IEP) |
Response to jasmonic acid GO:0009753
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
|
3 | Q9LDE1 (/IEP) Q9LK95 (/IEP) Q9SPG9 (/IEP) |
Jasmonic acid mediated signaling pathway GO:0009867
A series of molecular signals mediated by jasmonic acid.
|
3 | Q9LK95 (/IEP) Q9SPG9 (/IEP) Q9SSA1 (/IEP) |
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
3 | O80883 (/IMP) Q94FL7 (/IMP) Q9S773 (/IMP) |
Stamen development GO:0048443
The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure.
|
3 | Q9LK95 (/IMP) Q9SPG9 (/IMP) Q9SSA1 (/IMP) |
Stamen filament development GO:0080086
The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen.
|
3 | Q9LK95 (/IGI) Q9SPG9 (/IGI) Q9SSA1 (/IGI) |
Regulation of pollen tube growth GO:0080092
Any process that modulates the frequency, rate or extent of pollen tube growth.
|
3 | O80883 (/IMP) Q94FL7 (/IMP) Q9S773 (/IMP) |
Response to ethylene GO:0009723
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
|
2 | Q39028 (/IEP) Q9LDE1 (/IEP) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | A0A178VEK7 (/IMP) O80883 (/IMP) |
Response to cadmium ion GO:0046686
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
|
2 | Q39028 (/IEP) Q94CJ3 (/IEP) |
Response to water deprivation GO:0009414
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
|
1 | Q39028 (/IEP) |
Pollen development GO:0009555
The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
|
1 | O80883 (/IMP) |
Response to fungus GO:0009620
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
|
1 | Q9LDE1 (/IMP) |
Response to absence of light GO:0009646
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
|
1 | Q9SCP1 (/IEP) |
Gibberellin biosynthetic process GO:0009686
The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.
|
1 | Q9C9G7 (/IMP) |
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
1 | Q39028 (/IMP) |
Response to gibberellin GO:0009739
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
|
1 | O80883 (/IEP) |
Gibberellic acid mediated signaling pathway GO:0009740
A series of molecular signals mediated by the detection of gibberellic acid.
|
1 | O80883 (/TAS) |
Positive regulation of abscisic acid-activated signaling pathway GO:0009789
Any process that activates or increases the frequency, rate or extent of abscisic acid (ABA) signaling.
|
1 | O80883 (/IMP) |
Pollen tube growth GO:0009860
Growth of pollen via tip extension of the intine wall.
|
1 | Q94FL7 (/IMP) |
Root morphogenesis GO:0010015
The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support.
|
1 | Q9C9G7 (/IMP) |
Response to chitin GO:0010200
A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
|
1 | Q9SCP1 (/IEP) |
Negative regulation of gibberellin biosynthetic process GO:0010373
Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins.
|
1 | Q9C9G7 (/IMP) |
Cellular response to phosphate starvation GO:0016036
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
|
1 | Q9C9G7 (/IEP) |
Cellular response to phosphate starvation GO:0016036
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
|
1 | Q39028 (/IMP) |
Positive regulation of programmed cell death GO:0043068
Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.
|
1 | O80883 (/IMP) |
Regulation of RNA splicing GO:0043484
Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
1 | O49020 (/TAS) |
Cell cycle G2/M phase transition GO:0044839
The cell cycle process by which a cell in G2 phase commits to M phase.
|
1 | A0A178VEK7 (/IMP) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | Q9C9G7 (/IMP) |
Pollen sperm cell differentiation GO:0048235
The process in which a relatively unspecialized cell acquires specialized features of a haploid sperm cell within the plant gametophyte.
|
1 | A0A178VEK7 (/IEP) |
Generative cell mitosis GO:0055047
The process in which the generative cell divides by mitosis to form two haploid cells. These will subsequently differentiate into sperm cells.
|
1 | A0A178VEK7 (/IMP) |
Phosphate ion homeostasis GO:0055062
Any process involved in the maintenance of an internal steady state of phosphate ions within an organism or cell.
|
1 | Q9C9G7 (/IMP) |
Regulation of leaf morphogenesis GO:1901371
Any process that modulates the frequency, rate or extent of leaf morphogenesis.
|
1 | O80883 (/IMP) |
Response to salt GO:1902074
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus.
|
1 | Q9FGY3 (/IEP) |
Protein storage vacuole organization GO:1990019
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a protein storage vacuole, a storage vacuole that contains a lytic vacuole.
|
1 | O80883 (/IMP) |
There are 4 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | M1FPW6 (/IDA) O80883 (/IDA) Q39028 (/IDA) Q94FL7 (/IDA) Q9C9G7 (/IDA) Q9LDE1 (/IDA) Q9S773 (/IDA) |
Pollen tube GO:0090406
A tubular cell projection that is part of a pollen tube cell and extends from a pollen grain.
|
3 | O80883 (/IDA) Q94FL7 (/IDA) Q9S773 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O80883 (/TAS) |
Generative cell nucleus GO:0048555
The nucleus of the generative cell, a cell contained within the pollen grain that will divide to produce two haploid sperm cells.
|
1 | A0A178VEK7 (/IDA) |