1 keywords

CATH Domain 3h41A02

CATH Classification

Level CATH Code Description
Class 2 Mainly Beta
Architecture 2.30 Roll
Topology 2.30.30 SH3 type barrels.
Homologous Superfamily 2.30.30.40 SH3 Domains

Domain Context

CATH Clusters

Superfamily SH3 Domains
Functional Family

Enzyme Information

3.4.14.13
Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase.
based on mapping to UniProt Q736M3
The enzyme releases L-Ala-gamma-D-Glu dipeptides from cell wall peptides via cleavage of an L-Ala-gamma-D-Glu-|-L-Lys bond.
-!- The enzyme, characterized from the bacterium Bacillus subtilis, is involved in the recycling of the murein peptide.

UniProtKB Entries (1)

Q736M3
YKFC_BACC1
Bacillus cereus ATCC 10987
Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase

PDB Structure

PDB 3H41
External Links
Method X-RAY DIFFRACTION
Organism
Primary Citation
Structure of the gamma-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-[gamma]-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases
Xu, Q., Abdubek, P., Astakhova, T., Axelrod, H.L., Bakolitsa, C., Cai, X., Carlton, D., Chen, C., Chiu, H.J., Chiu, M., Clayton, T., Das, D., Deller, M.C., Duan, L., Ellrott, K., Farr, C.L., Feuerhelm, J., Grant, J.C., Grzechnik, A., Han, G.W., Jaroszewski, L., Jin, K.K., Klock, H.E., Knuth, M.W., Kozbial, P., Krishna, S.S., Kumar, A., Lam, W.W., Marciano, D., Miller, M.D., Morse, A.T., Nigoghossian, E., Nopakun, A., Okach, L., Puckett, C., Reyes, R., Tien, H.J., Trame, C.B., van den Bedem, H., Weekes, D., Wooten, T., Yeh, A., Hodgson, K.O., Wooley, J., Elsliger, M.A., Deacon, A.M., Godzik, A., Lesley, S.A., Wilson, I.A.
Acta Crystallogr.,Sect.F