PDB 5lj5

PDB Information

PDB5LJ5
MethodELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation
Cryo-EM structure of the spliceosome immediately after branching.
Galej, W.P., Wilkinson, M.E., Fica, S.M., Oubridge, C., Newman, A.J., Nagai, K.
Nature
HeaderSplicing
Released2016-07-17
Resolution3.800
CATH Insert Date09 Oct, 2016

PDB Images (79)

PDB Prints

PDB Chains (45)

Chain ID Date inserted into CATH CATH Status
A 10 Oct, 2016 Holding pen
b 10 Oct, 2016 Chopped
B 10 Oct, 2016 Chopped
C 10 Oct, 2016 Holding pen
d 10 Oct, 2016 Chopped
D 10 Oct, 2016 Holding pen
e 10 Oct, 2016 Chopped
E 10 Oct, 2016 Rejected
f 10 Oct, 2016 Chopped
F 10 Oct, 2016 Chopped
g 10 Oct, 2016 Chopped
G 10 Oct, 2016 Chopped
h 10 Oct, 2016 Chopped
H 10 Oct, 2016 Holding pen
I 10 Oct, 2016 Rejected
j 10 Oct, 2016 Chopped
J 10 Oct, 2016 Chopped
k 10 Oct, 2016 Chopped
K 10 Oct, 2016 Holding pen
l 10 Oct, 2016 Chopped
L 10 Oct, 2016 Holding pen
m 10 Oct, 2016 Chopped
M 10 Oct, 2016 Holding pen
n 10 Oct, 2016 Chopped
N 10 Oct, 2016 Holding pen
O 10 Oct, 2016 Domchop review
p 10 Oct, 2016 Chopped
P 10 Oct, 2016 Rejected
q 10 Oct, 2016 Chopped
Q 10 Oct, 2016 Domchop review
r 10 Oct, 2016 Chopped
R 10 Oct, 2016 Chopped
s 10 Oct, 2016 Chopped
S 10 Oct, 2016 Holding pen
t 10 Oct, 2016 Write scan list
T 10 Oct, 2016 Holding pen
u 10 Oct, 2016 Holding pen
U 10 Oct, 2016 Rejected
v 10 Oct, 2016 Holding pen
V 10 Oct, 2016 Rejected
w 10 Oct, 2016 Holding pen
W 10 Oct, 2016 Chopped
x 10 Oct, 2016 Domchop allotted
Y 10 Oct, 2016 Chopped
Z 10 Oct, 2016 Rejected

CATH Domains (33)

Domain ID Date inserted into CATH Superfamily CATH Status
5lj5b00 30 Nov, 2016 Holding pen
5lj5B01 31 May, 2018 3.40.50.300 Assigned
5lj5B02 31 May, 2018 3.40.50.300 Assigned
5lj5B03 31 May, 2018 1.10.10.10 Assigned
5lj5B04 31 May, 2018 1.10.3380.10 Assigned
5lj5B05 31 May, 2018 1.10.150.20 Assigned
5lj5B06 31 May, 2018 2.60.40.150 Assigned
5lj5B07 31 May, 2018 3.40.50.300 Assigned
5lj5B08 31 May, 2018 3.40.50.300 Assigned
5lj5B09 31 May, 2018 1.10.10.10 Assigned
5lj5B10 31 May, 2018 1.10.3380.10 Assigned
5lj5B11 31 May, 2018 1.10.150.20 Assigned
5lj5B12 31 May, 2018 2.60.40.150 Assigned
5lj5d00 13 Oct, 2016 2.30.30.100 Assigned
5lj5e00 13 Oct, 2016 2.30.30.100 Assigned
5lj5f00 13 Oct, 2016 2.30.30.100 Assigned
5lj5F00 30 Nov, 2016 Holding pen
5lj5g00 13 Oct, 2016 2.30.30.100 Assigned
5lj5G00 30 Nov, 2016 Holding pen
5lj5h00 30 Nov, 2016 2.30.30.100 Assigned
5lj5j00 13 Oct, 2016 2.30.30.100 Assigned
5lj5J00 14 Dec, 2017 2.130.10.10 Assigned
5lj5k00 30 Nov, 2016 Holding pen
5lj5l00 30 Nov, 2016 2.30.30.100 Assigned
5lj5m00 14 Oct, 2016 2.30.30.100 Assigned
5lj5n00 14 Oct, 2016 2.30.30.100 Assigned
5lj5p00 14 Oct, 2016 2.30.30.100 Assigned
5lj5q00 14 Oct, 2016 2.30.30.100 Assigned
5lj5r00 14 Oct, 2016 2.30.30.100 Assigned
5lj5R00 30 Nov, 2016 Holding pen
5lj5s00 16 Feb, 2017 Write scan list
5lj5W00 13 Oct, 2016 Holding pen
5lj5Y00 13 Oct, 2016 3.30.70.330 Assigned

UniProtKB Entries (31)

Accession Gene ID Taxon Description
Q12417 PRP46_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor PRP46
Q04048 SYF1_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor SYF1
P40018 RSMB_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein-associated protein B
Q03375 CWC21_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor CWC21
Q02260 SMD1_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein Sm D1
P32523 PRP19_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-processing factor 19
P36048 SN114_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor SNU114
P43321 SMD3_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein Sm D3
Q03654 CEF1_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor CEF1
Q02260 SMD1_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein Sm D1
P54999 RUXF_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein F
Q08963 RU2A_YEAST Saccharomyces cerevisiae S288C U2 small nuclear ribonucleoprotein A'
P32639 BRR2_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing helicase BRR2
Q06217 SMD2_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein Sm D2
P54999 RUXF_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein F
P32523 PRP19_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-processing factor 19
Q06217 SMD2_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein Sm D2
P40204 RUXG_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein G
P40204 RUXG_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein G
P40018 RSMB_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein-associated protein B
Q12330 RUXE_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein E
P32523 PRP19_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-processing factor 19
P33334 PRP8_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor 8
P40567 MSL1_YEAST Saccharomyces cerevisiae S288C U2 small nuclear ribonucleoprotein B''
P15938 PRP16_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
Q12046 CWC2_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor CWC2
P43321 SMD3_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein Sm D3
P32523 PRP19_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-processing factor 19
P21374 ISY1_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor ISY1
Q12309 CLF1_YEAST Saccharomyces cerevisiae S288C Pre-mRNA-splicing factor CLF1
Q12330 RUXE_YEAST Saccharomyces cerevisiae S288C Small nuclear ribonucleoprotein E