PDB 5lj3
PDB Information
| PDB | 5LJ3 |
| Method | ELECTRON MICROSCOPY |
| Host Organism | |
| Gene Source | |
| Primary Citation | Cryo-EM structure of the spliceosome immediately after branching.
Nature
|
| Header | Splicing |
| Released | 2016-07-17 |
| Resolution | 3.800 |
| CATH Insert Date | 14 Aug, 2016 |
PDB Images (60)
5lj3
PDB 5lj3
5lj3A
PDB Chain 5lj3A
5lj3b
PDB Chain 5lj3b
5lj3C
PDB Chain 5lj3C
5lj3d
PDB Chain 5lj3d
5lj3D
PDB Chain 5lj3D
5lj3e
PDB Chain 5lj3e
5lj3E
PDB Chain 5lj3E
5lj3f
PDB Chain 5lj3f
5lj3F
PDB Chain 5lj3F
5lj3g
PDB Chain 5lj3g
5lj3G
PDB Chain 5lj3G
5lj3h
PDB Chain 5lj3h
5lj3H
PDB Chain 5lj3H
5lj3I
PDB Chain 5lj3I
5lj3j
PDB Chain 5lj3j
5lj3J
PDB Chain 5lj3J
5lj3k
PDB Chain 5lj3k
5lj3K
PDB Chain 5lj3K
5lj3l
PDB Chain 5lj3l
5lj3L
PDB Chain 5lj3L
5lj3m
PDB Chain 5lj3m
5lj3M
PDB Chain 5lj3M
5lj3n
PDB Chain 5lj3n
5lj3N
PDB Chain 5lj3N
5lj3O
PDB Chain 5lj3O
5lj3p
PDB Chain 5lj3p
5lj3P
PDB Chain 5lj3P
5lj3q
PDB Chain 5lj3q
5lj3r
PDB Chain 5lj3r
5lj3R
PDB Chain 5lj3R
5lj3S
PDB Chain 5lj3S
5lj3T
PDB Chain 5lj3T
5lj3U
PDB Chain 5lj3U
5lj3V
PDB Chain 5lj3V
5lj3W
PDB Chain 5lj3W
5lj3x
PDB Chain 5lj3x
5lj3Y
PDB Chain 5lj3Y
5lj3Z
PDB Chain 5lj3Z
5lj3b00
CATH Domain 5lj3b00
5lj3d00
CATH Domain 5lj3d00
5lj3e00
CATH Domain 5lj3e00
5lj3f00
CATH Domain 5lj3f00
5lj3F00
CATH Domain 5lj3F00
5lj3g00
CATH Domain 5lj3g00
5lj3G00
CATH Domain 5lj3G00
5lj3h00
CATH Domain 5lj3h00
5lj3j00
CATH Domain 5lj3j00
5lj3J00
CATH Domain 5lj3J00
5lj3k00
CATH Domain 5lj3k00
5lj3l00
CATH Domain 5lj3l00
5lj3m00
CATH Domain 5lj3m00
5lj3n00
CATH Domain 5lj3n00
5lj3O00
CATH Domain 5lj3O00
5lj3p00
CATH Domain 5lj3p00
5lj3q00
CATH Domain 5lj3q00
5lj3r00
CATH Domain 5lj3r00
5lj3R00
CATH Domain 5lj3R00
5lj3W00
CATH Domain 5lj3W00
5lj3Y00
CATH Domain 5lj3Y00
PDB Prints
PDB Chains (38)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| A | 15 Aug, 2016 | Holding pen |
| b | 15 Aug, 2016 | Chopped |
| C | 15 Aug, 2016 | Holding pen |
| d | 15 Aug, 2016 | Chopped |
| D | 15 Aug, 2016 | Domchop review |
| e | 15 Aug, 2016 | Chopped |
| E | 15 Aug, 2016 | Rejected |
| f | 15 Aug, 2016 | Chopped |
| F | 15 Aug, 2016 | Chopped |
| g | 15 Aug, 2016 | Chopped |
| G | 15 Aug, 2016 | Chopped |
| h | 15 Aug, 2016 | Chopped |
| H | 15 Aug, 2016 | Domchop review |
| I | 15 Aug, 2016 | Rejected |
| j | 15 Aug, 2016 | Chopped |
| J | 15 Aug, 2016 | Chopped |
| k | 15 Aug, 2016 | Chopped |
| K | 15 Aug, 2016 | Domchop review |
| l | 15 Aug, 2016 | Chopped |
| L | 15 Aug, 2016 | Holding pen |
| m | 15 Aug, 2016 | Chopped |
| M | 15 Aug, 2016 | Holding pen |
| n | 15 Aug, 2016 | Chopped |
| N | 15 Aug, 2016 | Domchop allotted |
| O | 15 Aug, 2016 | Chopped |
| p | 15 Aug, 2016 | Chopped |
| P | 15 Aug, 2016 | Rejected |
| q | 15 Aug, 2016 | Chopped |
| r | 15 Aug, 2016 | Chopped |
| R | 15 Aug, 2016 | Chopped |
| S | 15 Aug, 2016 | Domchop review |
| T | 15 Aug, 2016 | Domchop review |
| U | 15 Aug, 2016 | Rejected |
| V | 15 Aug, 2016 | Rejected |
| W | 15 Aug, 2016 | Chopped |
| x | 15 Aug, 2016 | Rejected |
| Y | 15 Aug, 2016 | Chopped |
| Z | 15 Aug, 2016 | Rejected |
CATH Domains (21)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5lj3b00 | 30 Nov, 2016 | Holding pen | |
| 5lj3d00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3e00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3f00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3F00 | 29 Nov, 2016 | Holding pen | |
| 5lj3g00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3G00 | 29 Nov, 2016 | Holding pen | |
| 5lj3h00 | 30 Nov, 2016 | 2.30.30.100 | Assigned |
| 5lj3j00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3J00 | 14 Dec, 2017 | 2.130.10.10 | Assigned |
| 5lj3k00 | 30 Nov, 2016 | Holding pen | |
| 5lj3l00 | 30 Nov, 2016 | 2.30.30.100 | Assigned |
| 5lj3m00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3n00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3O00 | 29 Nov, 2016 | Write scan list | |
| 5lj3p00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3q00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3r00 | 01 Sep, 2016 | 2.30.30.100 | Assigned |
| 5lj3R00 | 29 Nov, 2016 | Write scan list | |
| 5lj3W00 | 01 Sep, 2016 | Write scan list | |
| 5lj3Y00 | 01 Sep, 2016 | 3.30.70.330 | Assigned |
UniProtKB Entries (25)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| Q02260 | SMD1_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D1 |
| P21374 | ISY1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor ISY1 |
| Q12046 | CWC2_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CWC2 |
| Q02260 | SMD1_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D1 |
| Q12417 | PRP46_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor PRP46 |
| Q08963 | RU2A_YEAST | Saccharomyces cerevisiae S288C | U2 small nuclear ribonucleoprotein A' |
| Q12309 | CLF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CLF1 |
| Q04048 | SYF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor SYF1 |
| Q06217 | SMD2_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D2 |
| P40204 | RUXG_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein G |
| Q12330 | RUXE_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein E |
| P43321 | SMD3_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D3 |
| Q03375 | CWC21_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CWC21 |
| P54999 | RUXF_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein F |
| P40567 | MSL1_YEAST | Saccharomyces cerevisiae S288C | U2 small nuclear ribonucleoprotein B'' |
| Q03654 | CEF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CEF1 |
| P40204 | RUXG_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein G |
| P43321 | SMD3_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D3 |
| P33334 | PRP8_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor 8 |
| P40018 | RSMB_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein-associated protein B |
| P40018 | RSMB_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein-associated protein B |
| P54999 | RUXF_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein F |
| P36048 | SN114_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor SNU114 |
| Q06217 | SMD2_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D2 |
| Q12330 | RUXE_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein E |