PDB 2vqf

PDB Information

PDB2VQF
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding.
Kurata, S., Weixlbaumer, A., Ohtsuki, T., Shimazaki, T., Wada, T., Kirino, Y., Takai, K., Watanabe, K., Ramakrishnan, V., Suzuki, T.
J.Biol.Chem.
HeaderRibosome
Released2008-03-14
Resolution2.900
CATH Insert Date01 May, 2008

PDB Images (49)

PDB Prints

PDB Chains (23)

Chain ID Date inserted into CATH CATH Status
A 01 May, 2008 Rejected
B 01 May, 2008 Chopped
C 01 May, 2008 Chopped
D 01 May, 2008 Chopped
E 01 May, 2008 Chopped
F 01 May, 2008 Chopped
G 01 May, 2008 Chopped
H 01 May, 2008 Chopped
I 01 May, 2008 Chopped
J 01 May, 2008 Chopped
K 01 May, 2008 Chopped
L 01 May, 2008 Chopped
M 01 May, 2008 Chopped
N 01 May, 2008 Chopped
O 01 May, 2008 Chopped
P 01 May, 2008 Chopped
Q 01 May, 2008 Chopped
R 01 May, 2008 Chopped
S 01 May, 2008 Chopped
T 01 May, 2008 Chopped
U 01 May, 2008 Rejected
X 01 May, 2008 Rejected
Y 01 May, 2008 Rejected

CATH Domains (25)

Domain ID Date inserted into CATH Superfamily CATH Status
2vqfB01 30 Jul, 2008 3.40.50.10490 Assigned
2vqfB02 30 Jul, 2008 1.10.287.610 Assigned
2vqfC01 02 May, 2008 3.30.300.20 Assigned
2vqfC02 02 May, 2008 3.30.1140.32 Assigned
2vqfD01 02 May, 2008 1.10.1050.10 Assigned
2vqfD02 02 May, 2008 3.10.290.10 Assigned
2vqfE01 02 May, 2008 3.30.160.20 Assigned
2vqfE02 02 May, 2008 3.30.230.10 Assigned
2vqfF00 02 May, 2008 3.30.70.60 Assigned
2vqfG00 02 May, 2008 1.10.455.10 Assigned
2vqfH01 02 May, 2008 3.30.1370.30 Assigned
2vqfH02 02 May, 2008 3.30.1490.10 Assigned
2vqfI00 02 May, 2008 3.30.230.10 Assigned
2vqfJ00 02 May, 2008 3.30.70.600 Assigned
2vqfK00 02 May, 2008 3.30.420.80 Assigned
2vqfL00 02 May, 2008 2.40.50.140 Assigned
2vqfM01 02 May, 2008 1.10.8.50 Assigned
2vqfM02 02 May, 2008 4.10.910.10 Assigned
2vqfN00 02 May, 2008 4.10.830.10 Assigned
2vqfO00 02 May, 2008 1.10.287.10 Assigned
2vqfP00 02 May, 2008 3.30.1320.10 Assigned
2vqfQ00 02 May, 2008 2.40.50.140 Assigned
2vqfR00 02 May, 2008 4.10.640.10 Assigned
2vqfS00 02 May, 2008 3.30.860.10 Assigned
2vqfT00 02 May, 2008 1.20.58.110 Assigned

UniProtKB Entries (19)

Accession Gene ID Taxon Description
P80382 RS18_THETH Thermus thermophilus 30S ribosomal protein S18
P17291 RS7_THET8 Thermus thermophilus HB8 30S ribosomal protein S7
P0DOY9 RS8_THET8 Thermus thermophilus HB8 30S ribosomal protein S8
Q5SLP8 RS6_THET8 Thermus thermophilus HB8 30S ribosomal protein S6
P24321 RS17_THETH Thermus thermophilus 30S ribosomal protein S17
Q5SHN7 RS10_THET8 Thermus thermophilus HB8 30S ribosomal protein S10
Q5SJH3 RS16_THET8 Thermus thermophilus HB8 30S ribosomal protein S16
A0A0N0BLP2 RS14Z_THEAQ Thermus aquaticus 30S ribosomal protein S14 type Z
P80376 RS11_THET8 Thermus thermophilus HB8 30S ribosomal protein S11
P80372 RS3_THET8 Thermus thermophilus HB8 30S ribosomal protein S3
Q5SHQ5 RS5_THET8 Thermus thermophilus HB8 30S ribosomal protein S5
P80377 RS13_THET8 Thermus thermophilus HB8 30S ribosomal protein S13
P62669 RS9_THET2 Thermus thermophilus HB27 30S ribosomal protein S9
Q5SJ76 RS15_THET8 Thermus thermophilus HB8 30S ribosomal protein S15
P62661 RS20_THET2 Thermus thermophilus HB27 30S ribosomal protein S20
Q5SHP2 RS19_THET8 Thermus thermophilus HB8 30S ribosomal protein S19
P80373 RS4_THET8 Thermus thermophilus HB8 30S ribosomal protein S4
P80371 RS2_THET8 Thermus thermophilus HB8 30S ribosomal protein S2
Q5SHN3 RS12_THET8 Thermus thermophilus HB8 30S ribosomal protein S12