CATH Domain: 1pdnC01 XML data for domain: 1pdnC01

Molscript image for 1pdnC01
1pdnC01
PDB coordinates for domain 1pdnC01

PDB 1pdn, Chain C, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.117
1.10.10.10.117.1
1.10.10.10.117.1.2
1.10.10.10.117.1.2.1
1.10.10.10.117.1.2.1.1

[top]
Segment boundaries for domain 1pdnC01

Chopping figure for domain 1pdnC01
DomainStart PDB ResidueStop PDB Residue
1pdnC01 2 69
1pdnC02 70 124

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 1.10.10.10.117.1.2.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tc3C00 84.73 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 21 77 2.27 2.94
1w0uA00 81.88 Protein homodimerization activityTelomeric repeat-binding factor 2Protein C-terminus bindingTelomeric loop formationProtection from non-homologous end joining at telomere 1.10.10.60 55 5 75 2.35 3.10
1w0tA00 81.74 Protein homooligomerizationPositive regulation of mitotic cell cycleTelomere maintenance via telomere shorteningNegative regulation of telomerase activityG2/M transition of mitotic cell cycle 1.10.10.60 52 1 71 2.06 2.89
1gvdA00 81.59 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 52 11 72 2.32 3.19
1b8iB00 81.56 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 10 75 3.47 4.58
1e3oC02 81.19 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 8 65 2.52 3.87
1iv6A00 80.90 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 3 78 3.42 4.34
1gv2A02 79.84 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 8 66 2.10 3.15
2hyjA01 79.67 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 19 57 2.46 4.27
1fexA00 79.03 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 5 69 2.45 3.52
2fq4A01 78.45 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 47 12 59 2.76 4.67
3ccyA01 78.16 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 18 56 2.31 4.12
2ibdA01 77.96 Rhodococcus jostii RHA1Possible transcriptional regulator 1.10.10.60 45 11 56 2.41 4.30
1t56A01 77.70 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHRMycobacterium tuberculosis 1.10.10.60 46 10 57 2.79 4.85
1ic8A02 77.41 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 4 64 2.89 4.46
2raeA01 77.30 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 4 53 2.32 4.37
1bbyA00 76.62 Basal transcription factorsGeneral transcription factor IIF subunit 2General RNA polymerase II transcription factor activityHomo sapiensTranscription initiation factor TFIIF beta subunit 1.10.10.10 69 7 71 3.23 4.55
[1]
Displaying entries 1 to 17 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1pdnC01
QGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1pdnC01
GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:31

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"