CATH Superfamily 3.30.70.270

Browse Functional Families

ID	Function Family (FunFam) Name	Total Sequences	Structure?	Structural Representative	PDB Sites?	Alignment Diversity (0-100)
6	Gag-Pol polyprotein	705	3D	5k14A04	-	71.0
1	Diguanylate cyclase domain protein	606	3D	3i5cB02	-	96.6
2	DNA polymerase IV	468	3D	6ig1F01	-	94.0
4	Pol polyprotein	375	3D	4ncgB02	-	88.5
3	Transposon Ty3-G Gag-Pol polyprotein	290	3D	4ol8F01	-	83.3
5	DNA repair protein REV1	193	3D	3gqcD01	-	61.9
61	DNA polymerase IV	190	3D	4f4zB01	-	87.2
15	Genome polyprotein	185	3D	2xi3B03	-	79.2
22	DNA polymerase eta	185	3D	6mxoA01	-	86.2
7	Membrane-associated phosphodiesterase	161		-	-	70.0
8	Genome polyprotein	161		-	-	78.6
13	Polymerase DNA directed	151	3D	5ulxA01	-	87.6
9	Protein P	147		-	-	62.8
10	DNA repair protein REV1	135		-	-	74.6
11	DNA polymerase kappa	132		-	-	65.3
12	DNA polymerase V subunit	114		-	-	67.0
14	DNA polymerase kappa subunit	105		-	-	95.5
16	POL polyprotein	83	3D	1jlcB03	-	69.6
17	Predicted diguanylate cyclase	80		-	-	86.6
20	Transposon Tf2-6 polyprotein-like Protein	78		-	-	99.4
19	DNA repair protein REV1	78		-	-	64.2
18	Diguanylate cyclase domain protein	78		-	-	29.5
21	Genome polyprotein	69		-	-	76.6
48	Gag-Pol polyprotein	57	3D	6mikA01	-	23.3
23	Pol	54		-	-	96.4
25	Retrovirus-related Pol polyprotein LINE-1	49		-	-	52.7
24	Predicted diguanylate cyclase	49		-	-	1.6
26	Transposon Ty3-G Gag-Pol polyprotein	49	3D	4ol8B03	-	98.2
27	RNase E specificity factor CsrD	46		-	-	76.6
28	Diguanylate cyclase domain protein	44		-	-	4.6
29	DNA polymerase eta	40		-	-	76.7
31	Genome polyprotein	38		-	-	19.1
32	Cyclic di-GMP phosphodiesterase Gmr	38		-	-	3.4
33	Probable diguanylate cyclase YeaP	38		-	-	0.7
30	Genome polyprotein	38		-	-	21.1
34	Diguanylate cyclase domain protein	37		-	-	10.7
35	Diguanylate cyclase YdeH	37	3D	3tvkA00	-	7.6
36	Diguanylate cyclase domain-containing protein	35		-	-	9.7
37	Sensory box/GGDEF family protein	35		-	-	13.6
38	Diguanylate cyclase domain protein	27		-	-	15.2
42	Sensor domain-containing diguanylate cyclase	25	3D	3qyyB00	-	94.7
40	DNA repair protein REV1	24		-	-	72.0
39	Paternally expressed 10	24		-	-	7.0
41	Uncharacterized protein	24		-	-	91.1
45	Transposon Tf2-7 polyprotein	22		-	-	89.4
43	Diguanylate cyclase GGDEF	22		-	-	20.4
44	Diguanylate cyclase GGDEF	22		-	-	92.0
47	Diguanylate cyclase GGDEF	21		-	-	0.0
46	Genome polyprotein	21		-	-	76.1
50	DNA repair protein	19		-	-	18.6
49	Gag-Pol polyprotein	19		-	-	19.1
53	DNA polymerase IV	18		-	-	75.4
55	Sensor domain-containing diguanylate cyclase	18		-	-	0.0
54	Putative DNA polymerase kappa	18		-	-	72.3
56	Sister chromatid cohesion protein Eso1	18		-	-	83.9
51	Genome polyprotein	18		-	-	42.6
52	DNA repair protein REV1	18		-	-	30.8
57	DNA polymerase eta isoform X2	17		-	-	25.3
58	Protein P	17		-	-	78.2
62	Uncharacterized protein	16		-	-	82.9
63	Zinc knuckle domaincontaining protein	16		-	-	97.0
59	Diguanylate cyclase GGDEF	16		-	-	28.5
60	Diguanylate cyclase	16		-	-	59.1
91	DNA repair protein REV1	16	3D	5wmbA02	-	47.4
64	Diguanylate cyclase	15		-	-	30.5
66	Endogenous retrovirus group K member 6 Pol protein	15		-	-	76.0
65	Genome polyprotein	15		-	-	73.1
83	Genome polyprotein	15	3D	1s4fD04	-	38.8
67	DNA polymerase iota, putative	14		-	-	60.9
68	Putative diguanylate cyclase	14		-	-	67.4
73	Diguanylate cyclase GGDEF	13		-	-	8.7
70	DNA polymerase IV	13		-	-	15.4
86	Protein FimX	13	3D	3hvaB00	-	91.5
69	Probable diguanylate cyclase DgcE	13		-	-	13.5
72	DNA polymerase IV	13		-	-	14.8
71	Sensor domain-containing diguanylate cyclase	13		-	-	23.8
75	Biofilm formation regulator HmsP	12		-	-	12.3
76	Diguanylate cyclase	12		-	-	11.8
77	DNA polymerase IV	12		-	-	56.1
74	Diguanylate cyclase DosC	12		-	-	0.7
81	Uncharacterized protein	11		-	-	85.8
82	DNA polymerase eta	11		-	-	13.6
84	REV1, polymerase DNA directed	11		-	-	73.7
90	Diguanylate cyclase TpbB	11	3D	4iobA00	-	5.8
78	Diguanylate cyclase response regulator	11		-	-	0.0
80	Bifunctional diguanylate cyclase/phosphodiesterase	11		-	-	0.0
85	Endogenous retrovirus group K member 10 Pol protein	11		-	-	46.4
79	Diguanylate cyclase	11		-	-	0.0
93	Sensor domain-containing diguanylate cyclase	10		-	-	63.8
89	Biofilm architecture maintenance protein mbaA	10		-	-	8.3
87	YALI0E34980p	10		-	-	80.3
88	GGDEF family protein	10		-	-	6.1
92	Genome polyprotein	10		-	-	21.9
95	Bifunctional diguanylate cyclase/phosphodiesterase	9		-	-	0.0
98	Diguanylate cyclase	9		-	-	12.7
96	Uncharacterized protein	9		-	-	85.0
94	GGDEF family protein	9		-	-	9.8
97	Related to DNA polymerase eta	9		-	-	28.1
101	DNA-directed polymerase kappa, putative AFU_orthologue AFUA_7G01270	9		-	-	68.1
99	DNA polymerase IV	9		-	-	0.0
100	Uncharacterized protein	9		-	-	97.5
102	Putative DNA polymerase eta	9		-	-	43.2
167	Response regulator PleD	9	3D	2wb4B02	-	10.7
107	GGDEF domain-containing protein	8		-	-	6.4
104	Heme-regulated cyclic AMP phosphodiesterase Direct oxygen sensor protein	8		-	-	2.8
112	Uncharacterized protein	8		-	-	8.0
115	Polyprotein of retroviral origin, putative	8		-	-	92.8
103	Sensory box/GGDEF family protein	8		-	-	6.4
116	Sensory box/GGDEF family protein	8		-	-	72.8
110	DNApol-iota, isoform A	8		-	-	46.3
111	Genome polyprotein	8		-	-	19.8
108	GGDEF family protein	8		-	-	6.9
114	Sensory box/GGDEF family protein	8		-	-	0.0
130	Diguanylate cyclase/phosphodiesterase	8	3D	3pjxA01	-	22.7
109	GGDEF family protein	8		-	-	9.0
106	GGDEF family protein	8		-	-	11.1
113	DNA polymerase eta	8		-	-	0.0
105	Polyprotein	8		-	-	0.0
119	GGDEF family protein	7		-	-	0.0
121	AGAP001404-PA	7		-	-	16.6
122	Uncharacterized protein	7		-	-	79.9
125	Uncharacterized protein	7		-	-	77.5
120	Diguanylate cyclase	7		-	-	0.0
124	DNA repair protein REV1	7		-	-	40.6
117	GGDEF family protein	7		-	-	2.7
123	Deoxycytidyl transferase, putative	7		-	-	11.4
118	GGDEF family protein	7		-	-	0.0
133	Diguanylate cyclase GGDEF	6		-	-	5.7
129	GGDEF family protein	6		-	-	0.0
134	DNA polymerase kappa	6		-	-	42.7
126	GGDEF family protein	6		-	-	5.0
131	Related to DNA repair protein MUS-42	6		-	-	17.4
127	CRISPR-associated protein cas10/csm1, subtype III-a/mtube	6		-	-	5.7
132	Diguanylate cyclase	6		-	-	0.0
135	Uncharacterized protein	6		-	-	94.3
128	Transcriptional regulator CdgA	6		-	-	11.8
140	Diguanylate cyclase-related enzyme	5		-	-	0.0
142	Uncharacterized protein	5		-	-	81.7
138	Pro-Pol polyprotein	5		-	-	15.6
141	DNA polymerase eta subunit	5		-	-	8.0
137	Pol polyprotein	5		-	-	3.4
143		5		-	-	42.1
136	Diguanylate cyclase or phosphodiesterase	5		-	-	5.0
139	Pol polyprotein	5		-	-	0.0
144	Uncharacterized protein	5		-	-	75.8
154	Pol polyprotein	4		-	-	0.0
162	Uncharacterized protein	4		-	-	69.1
146		4		-	-	0.0
160	GGDEF family protein	4		-	-	9.3
157		4		-	-	15.0
145	Uncharacterized protein	4		-	-	82.6
161	Transposon Tf2-9 polyprotein-like Protein	4		-	-	0.0
149	Putative signal protein with GGDEF domain	4		-	-	0.7
153	Uncharacterized protein	4		-	-	69.2
158	DNA damage repair protein, putative	4		-	-	6.1
148		4		-	-	3.1
159	Putative diguanylate cyclase YcdT	4		-	-	0.0
163	Retrovirus-related Pol polyprotein from transposon gypsy-like Protein	4		-	-	84.6
151	Polymerase DNA directed	4		-	-	48.7
147	DNA polymerase Y family protein	4		-	-	33.8
155		4		-	-	9.5
164		4		-	-	71.3
152	Uncharacterized protein	4		-	-	48.3
156		4		-	-	2.7
150	DNA polymerase eta	4		-	-	58.3
165	Response regulator ActA	3		-	-	7.0
176		3		-	-	17.8
170	Diguanylate cyclase/phosphodiesterase GGDEF & EAL domain S	3		-	-	11.1
172	Cyclic di-GMP phosphodiesterase Gmr	3		-	-	0.0
166		3		-	-	4.5
175		3		-	-	26.6
181		3		-	-	5.4
180		3		-	-	12.9
186	Bifunctional diguanylate cyclase/phosphodiesterase	3		-	-	7.5
171		3		-	-	4.9
185		3		-	-	0.0
182		3		-	-	13.2
169	Putative diguanylate cyclase	3		-	-	6.4
179		3		-	-	81.6
191		3		-	-	68.4
190		3		-	-	60.1
189		3		-	-	0.0
192		3		-	-	48.0
183	PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	3		-	-	0.0
178		3		-	-	50.2
168		3		-	-	0.0
188		3		-	-	9.0
173		3		-	-	0.0
187	Uncharacterized protein	3		-	-	4.2
193		3		-	-	75.7
184	Diguanylate cyclase/phosphodiesterase GGDEF & EAL domains S	3		-	-	2.6
177		3		-	-	31.2
174	DNA polymerase kappa	3		-	-	20.3
211		2		-	-	28.2
225		2		-	-	0.0
208		2		-	-	9.4
222		2		-	-	0.0
226		2		-	-	0.0
220		2		-	-	2.7
203		2		-	-	0.0
215		2		-	-	0.0
212		2		-	-	41.0
221		2		-	-	0.0
234		2		-	-	0.7
249		2		-	-	21.7
210		2		-	-	7.1
216		2		-	-	0.0
199		2		-	-	0.0
237		2		-	-	27.1
229		2		-	-	0.0
241		2		-	-	41.2
238		2		-	-	48.8
246		2		-	-	49.9
207		2		-	-	0.0
240		2		-	-	0.0
219		2		-	-	8.2
196		2		-	-	0.0
233		2		-	-	0.0
245		2		-	-	44.8
195		2		-	-	0.0
242		2		-	-	2.0
204		2		-	-	0.0
197		2		-	-	0.0
247		2		-	-	48.6
206		2		-	-	4.0
200		2		-	-	0.0
239		2		-	-	0.0
244		2		-	-	42.0
202		2		-	-	37.2
228		2		-	-	7.9
194		2		-	-	0.0
205		2		-	-	0.0
213		2		-	-	17.6
201		2		-	-	44.8
218		2		-	-	0.0
223		2		-	-	0.0
235		2		-	-	0.0
232		2		-	-	0.0
214		2		-	-	0.0
243		2		-	-	37.7
236		2		-	-	0.0
230		2		-	-	1.5
217		2		-	-	5.3
209		2		-	-	0.0
248		2		-	-	40.1
231		2		-	-	6.0
224		2		-	-	0.0
198		2		-	-	8.2
227		2		-	-	0.0
296		1		-	-	0.0
290		1		-	-	0.0
302		1		-	-	0.0
328		1		-	-	0.0
305		1		-	-	0.0
313		1		-	-	0.0
339		1		-	-	0.0
289		1		-	-	0.0
258		1		-	-	0.0
295		1		-	-	0.0
306		1		-	-	0.0
300		1		-	-	0.0
292		1		-	-	0.0
318		1		-	-	0.0
323		1		-	-	0.0
301		1		-	-	0.0
269		1		-	-	0.0
279		1		-	-	0.0
253		1		-	-	0.0
291		1		-	-	0.0
309		1		-	-	0.0
261		1		-	-	0.0
317		1		-	-	0.0
336		1		-	-	0.0
330		1		-	-	0.0
286		1		-	-	0.0
280		1		-	-	0.0
314		1		-	-	0.0
299		1		-	-	0.0
271		1		-	-	0.0
335		1		-	-	0.0
282		1		-	-	0.0
332		1		-	-	0.0
285		1		-	-	0.0
270		1		-	-	0.0
276		1		-	-	0.0
262		1		-	-	0.0
265		1		-	-	0.0
254		1		-	-	0.0
327		1		-	-	0.0
257		1		-	-	0.0
275		1		-	-	0.0
272		1		-	-	0.0
266		1		-	-	0.0
260		1		-	-	0.0
324		1		-	-	0.0
331		1		-	-	0.0
281		1		-	-	0.0
326		1		-	-	0.0
320		1		-	-	0.0
298		1		-	-	0.0
252		1		-	-	0.0
277		1		-	-	0.0
264		1		-	-	0.0
255		1		-	-	0.0
325		1		-	-	0.0
308		1		-	-	0.0
322		1		-	-	0.0
267		1		-	-	0.0
274		1		-	-	0.0
311		1		-	-	0.0
250		1		-	-	0.0
256		1		-	-	0.0
287		1		-	-	0.0
337		1		-	-	0.0
310		1		-	-	0.0
316		1		-	-	0.0
293		1		-	-	0.0
251		1		-	-	0.0
334		1		-	-	0.0
321		1		-	-	0.0
284		1		-	-	0.0
303		1		-	-	0.0
315		1		-	-	0.0
312		1		-	-	0.0
338		1		-	-	0.0
259		1		-	-	0.0
288		1		-	-	0.0
273		1		-	-	0.0
263		1		-	-	0.0
329		1		-	-	0.0
304		1		-	-	0.0
297		1		-	-	0.0
283		1		-	-	0.0
278		1		-	-	0.0
333		1		-	-	0.0
319		1		-	-	0.0
294		1		-	-	0.0
307		1		-	-	0.0
268		1		-	-	0.0