The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: Transcription and mRNA export factor ENY2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 7 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
122 |
B2RYZ5 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
(112 more) |
Nuclear receptor transcription coactivator activity GO:0030374
The function of a transcription cofactor that activates transcription in conjuction with a ligand-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself.
|
100 |
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
(90 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
50 |
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
Q9NPA8 (/IPI)
(40 more) |
Nuclear receptor transcription coactivator activity GO:0030374
The function of a transcription cofactor that activates transcription in conjuction with a ligand-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
Nuclear receptor transcription coactivator activity GO:0030374
The function of a transcription cofactor that activates transcription in conjuction with a ligand-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
122 |
B2RYZ5 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
(112 more) |
Poly(A)+ mRNA export from nucleus GO:0016973
The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.
|
100 |
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
(90 more) |
Histone deubiquitination GO:0016578
The modification of histones by removal of ubiquitin groups.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
Histone deubiquitination GO:0016578
The modification of histones by removal of ubiquitin groups.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Poly(A)+ mRNA export from nucleus GO:0016973
The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.
|
50 |
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
Q9NPA8 (/IMP)
(40 more) |
Poly(A)+ mRNA export from nucleus GO:0016973
The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Negative regulation of insulin secretion involved in cellular response to glucose stimulus GO:0061179
Any process that decreases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
|
50 |
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
D3ZWF5 (/IMP)
(40 more) |
Negative regulation of insulin secretion involved in cellular response to glucose stimulus GO:0061179
Any process that decreases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
There are 16 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
SAGA complex GO:0000124
A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
|
122 |
B2RYZ5 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
B5FZ63 (/ISS)
(112 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
100 |
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
(90 more) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
100 |
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
A0A024R9D9 (/IDA)
(90 more) |
Nuclear pore nuclear basket GO:0044615
A filamentous, cage-like assembly on the nuclear face of the nuclear pore complex (NPC). In S. cerevisiae, Mlp1p and Mlp2p are two major components of the NPC nuclear basket. In vertebrates, Tpr is a major component.
|
100 |
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
(90 more) |
Transcription export complex 2 GO:0070390
A protein complex that couples SAGA-dependent gene expression to mRNA export at the inner side of the nuclear pore complex (NPC). The TREX-2 complex is tethered to the inner side of the NPC via the nucleoporins Nup1 and Nup60; in S. cerevisiae it contains Sac3p, Thp1p, Sem1, Sus1p and Cdc31p.
|
100 |
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
(90 more) |
DUBm complex GO:0071819
A protein complex that forms part of SAGA-type complexes SAGA and SLIK, and mediates deubiquitination of histone H2B. In S. cerevisiae, the DUBm consists of the proteins Ubp8p, Sgf11p, Sus1p, and Sgf73p.
|
100 |
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
Q3ZBJ0 (/ISS)
(90 more) |
SAGA complex GO:0000124
A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
SAGA complex GO:0000124
A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Nuclear pore nuclear basket GO:0044615
A filamentous, cage-like assembly on the nuclear face of the nuclear pore complex (NPC). In S. cerevisiae, Mlp1p and Mlp2p are two major components of the NPC nuclear basket. In vertebrates, Tpr is a major component.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
Nuclear pore nuclear basket GO:0044615
A filamentous, cage-like assembly on the nuclear face of the nuclear pore complex (NPC). In S. cerevisiae, Mlp1p and Mlp2p are two major components of the NPC nuclear basket. In vertebrates, Tpr is a major component.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
Transcription export complex 2 GO:0070390
A protein complex that couples SAGA-dependent gene expression to mRNA export at the inner side of the nuclear pore complex (NPC). The TREX-2 complex is tethered to the inner side of the NPC via the nucleoporins Nup1 and Nup60; in S. cerevisiae it contains Sac3p, Thp1p, Sem1, Sus1p and Cdc31p.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
Transcription export complex 2 GO:0070390
A protein complex that couples SAGA-dependent gene expression to mRNA export at the inner side of the nuclear pore complex (NPC). The TREX-2 complex is tethered to the inner side of the NPC via the nucleoporins Nup1 and Nup60; in S. cerevisiae it contains Sac3p, Thp1p, Sem1, Sus1p and Cdc31p.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |
DUBm complex GO:0071819
A protein complex that forms part of SAGA-type complexes SAGA and SLIK, and mediates deubiquitination of histone H2B. In S. cerevisiae, the DUBm consists of the proteins Ubp8p, Sgf11p, Sus1p, and Sgf73p.
|
50 |
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
Q9NPA8 (/IDA)
(40 more) |
DUBm complex GO:0071819
A protein complex that forms part of SAGA-type complexes SAGA and SLIK, and mediates deubiquitination of histone H2B. In S. cerevisiae, the DUBm consists of the proteins Ubp8p, Sgf11p, Sus1p, and Sgf73p.
|
50 |
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
Q9JIX0 (/ISO)
(40 more) |