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CATH Superfamily 3.40.50.150

Vaccinia Virus protein VP39

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Vaccinia Virus protein VP39
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 6: Ribosomal RNA small subunit methyltransferase A

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 5 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RRNA (adenine-N6,N6-)-dimethyltransferase activity GO:0000179
Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.
 116 P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA)
(106 more)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
 116 P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA)
(106 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
 116 P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA)
(106 more)
RRNA binding GO:0019843
Interacting selectively and non-covalently with ribosomal RNA.
 116 P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA)
(106 more)
RRNA (adenine-N6,N6-)-dimethyltransferase activity GO:0000179
Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.
 7 Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS)

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
 116 P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP)
(106 more)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
 116 P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP)
(106 more)
RRNA base methylation GO:0070475
The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule.
 116 P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP) P06992 (/IMP)
(106 more)
RRNA modification GO:0000154
The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically.
 7 Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS) Q9KUS2 (/ISS)

There are 1 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
 116 P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA) P06992 (/IDA)
(106 more)