The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Ribosome-binding ATPase YchF

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 14 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
174 P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA)
(164 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
168 P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI) P0ABU2 (/IPI)
(158 more)
Enzyme inhibitor activity GO:0004857
Binds to and stops, prevents or reduces the activity of an enzyme.
143 P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP)
(133 more)
Ribosome binding GO:0043022
Interacting selectively and non-covalently with any part of a ribosome.
143 P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA)
(133 more)
Ribosomal large subunit binding GO:0043023
Interacting selectively and non-covalently with any part of the larger ribosomal subunit.
143 P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA) P0ABU2 (/IDA)
(133 more)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
25 Q6Z1J6 (/IDA) Q6Z1J6 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA)
(15 more)
Cadherin binding GO:0045296
Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
21 Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA)
(11 more)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
20 P38746 (/ISS) P38746 (/ISS) P38746 (/ISS) P38746 (/ISS) P38746 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS)
(10 more)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
4 Q6Z1J6 (/IDA) Q6Z1J6 (/IDA) Q9SA73 (/IDA) Q9SA73 (/IDA)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
2 Q6Z1J6 (/IDA) Q6Z1J6 (/IDA)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
2 O13998 (/ISO) Q9CZ30 (/ISO)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
1 Q9CZ30 (/ISO)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
1 O13998 (/NAS)
Nucleoside-triphosphatase activity GO:0017111
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
1 O14078 (/ISM)

There are 12 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Response to oxidative stress GO:0006979
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
143 P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP) P0ABU2 (/IEP)
(133 more)
Response to oxidative stress GO:0006979
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
143 P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP) P0ABU2 (/IMP)
(133 more)
Platelet degranulation GO:0002576
The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
21 Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS)
(11 more)
ATP metabolic process GO:0046034
The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
21 Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA)
(11 more)
Signal transduction GO:0007165
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
10 Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS) Q8IBM9 (/ISS)
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
4 Q6Z1J6 (/IDA) Q6Z1J6 (/IDA) Q9SA73 (/IDA) Q9SA73 (/IDA)
Negative regulation of response to salt stress GO:1901001
Any process that stops, prevents or reduces the frequency, rate or extent of response to salt stress.
4 Q6Z1J6 (/IMP) Q6Z1J6 (/IMP) Q9SA73 (/IMP) Q9SA73 (/IMP)
Response to cadmium ion GO:0046686
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
2 Q9SA73 (/IEP) Q9SA73 (/IEP)
Negative regulation of defense response to bacterium GO:1900425
Any process that stops, prevents or reduces the frequency, rate or extent of defense response to bacterium.
2 Q6Z1J6 (/IMP) Q6Z1J6 (/IMP)
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
1 B8BBN7 (/ISS)
ATP metabolic process GO:0046034
The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
1 Q9CZ30 (/ISO)
Negative regulation of response to salt stress GO:1901001
Any process that stops, prevents or reduces the frequency, rate or extent of response to salt stress.
1 B8BBN7 (/ISS)

There are 20 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
31 J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) Q6Z1J6 (/IDA) Q6Z1J6 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA)
(21 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
30 P38219 (/IDA) P38219 (/IDA) P38219 (/IDA) P38219 (/IDA) P38219 (/IDA) P38219 (/IDA) P38219 (/IDA) P38219 (/IDA) Q586V0 (/IDA) Q9NTK5 (/IDA)
(20 more)
Centrosome GO:0005813
A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
27 J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) J3KQ32 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA) Q9NTK5 (/IDA)
(17 more)
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
21 Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS)
(11 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
21 Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA)
(11 more)
Platelet alpha granule lumen GO:0031093
The volume enclosed by the membrane of the platelet alpha granule.
21 Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS) Q9NTK5 (/TAS)
(11 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
21 Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA) Q9NTK5 (/HDA)
(11 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
7 O53459 (/HDA) O53459 (/HDA) O53459 (/HDA) O53459 (/HDA) O53459 (/HDA) O53459 (/HDA) O53459 (/HDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
5 P38746 (/HDA) P38746 (/HDA) P38746 (/HDA) P38746 (/HDA) P38746 (/HDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
2 E9ADG1 (/ISO) Q9CZ30 (/ISO)
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
2 E2JL06 (/HDA) P91917 (/HDA)
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
2 Q9SA73 (/IDA) Q9SA73 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
2 F4I3J0 (/IDA) F4I3J0 (/IDA)
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
2 F4I3J0 (/IDA) F4I3J0 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 O13998 (/HDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
1 O14078 (/ISO)
Centrosome GO:0005813
A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
1 Q9CZ30 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 O13998 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9CZ30 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 B8BBN7 (/ISS)