PDB 6dzp
PDB Information
| PDB | 6DZP |
| Method | ELECTRON MICROSCOPY |
| Host Organism | |
| Gene Source | |
| Primary Citation | Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A.
|
| Header | Ribosome |
| Released | 2018-07-05 |
| Resolution | 3.420 |
| CATH Insert Date | 16 Dec, 2018 |
PDB Images (60)
6dzp
PDB 6dzp
6dzp3
PDB Chain 6dzp3
6dzpa
PDB Chain 6dzpa
6dzpA
PDB Chain 6dzpA
6dzpb
PDB Chain 6dzpb
6dzpB
PDB Chain 6dzpB
6dzpc
PDB Chain 6dzpc
6dzpC
PDB Chain 6dzpC
6dzpd
PDB Chain 6dzpd
6dzpD
PDB Chain 6dzpD
6dzpe
PDB Chain 6dzpe
6dzpE
PDB Chain 6dzpE
6dzpf
PDB Chain 6dzpf
6dzpF
PDB Chain 6dzpF
6dzpg
PDB Chain 6dzpg
6dzpG
PDB Chain 6dzpG
6dzpH
PDB Chain 6dzpH
6dzpI
PDB Chain 6dzpI
6dzpJ
PDB Chain 6dzpJ
6dzpK
PDB Chain 6dzpK
6dzpL
PDB Chain 6dzpL
6dzpM
PDB Chain 6dzpM
6dzpN
PDB Chain 6dzpN
6dzpO
PDB Chain 6dzpO
6dzpP
PDB Chain 6dzpP
6dzpQ
PDB Chain 6dzpQ
6dzpR
PDB Chain 6dzpR
6dzpS
PDB Chain 6dzpS
6dzpT
PDB Chain 6dzpT
6dzpU
PDB Chain 6dzpU
6dzpV
PDB Chain 6dzpV
6dzpW
PDB Chain 6dzpW
6dzpX
PDB Chain 6dzpX
6dzpy
PDB Chain 6dzpy
6dzpZ
PDB Chain 6dzpZ
6dzpa00
CATH Domain 6dzpa00
6dzpb00
CATH Domain 6dzpb00
6dzpc00
CATH Domain 6dzpc00
6dzpd00
CATH Domain 6dzpd00
6dzpD00
CATH Domain 6dzpD00
6dzpe00
CATH Domain 6dzpe00
6dzpE00
CATH Domain 6dzpE00
6dzpF00
CATH Domain 6dzpF00
6dzpI00
CATH Domain 6dzpI00
6dzpJ01
CATH Domain 6dzpJ01
6dzpJ02
CATH Domain 6dzpJ02
6dzpK00
CATH Domain 6dzpK00
6dzpL00
CATH Domain 6dzpL00
6dzpN01
CATH Domain 6dzpN01
6dzpP01
CATH Domain 6dzpP01
6dzpQ00
CATH Domain 6dzpQ00
6dzpR00
CATH Domain 6dzpR00
6dzpS00
CATH Domain 6dzpS00
6dzpT00
CATH Domain 6dzpT00
6dzpU00
CATH Domain 6dzpU00
6dzpV00
CATH Domain 6dzpV00
6dzpW01
CATH Domain 6dzpW01
6dzpW02
CATH Domain 6dzpW02
6dzpy00
CATH Domain 6dzpy00
6dzpZ00
CATH Domain 6dzpZ00
PDB Prints
PDB Chains (34)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| 3 | 16 Dec, 2018 | Rejected |
| a | 16 Dec, 2018 | Chopped |
| A | 16 Dec, 2018 | Rejected |
| b | 16 Dec, 2018 | Chopped |
| B | 16 Dec, 2018 | Rejected |
| c | 16 Dec, 2018 | Chopped |
| C | 16 Dec, 2018 | Holding pen |
| d | 16 Dec, 2018 | Chopped |
| D | 16 Dec, 2018 | Chopped |
| e | 16 Dec, 2018 | Chopped |
| E | 16 Dec, 2018 | Chopped |
| f | 16 Dec, 2018 | Rejected |
| F | 16 Dec, 2018 | Chopped |
| g | 16 Dec, 2018 | Write scan list |
| G | 16 Dec, 2018 | Holding pen |
| H | 16 Dec, 2018 | Holding pen |
| I | 16 Dec, 2018 | Chopped |
| J | 16 Dec, 2018 | Chopped |
| K | 16 Dec, 2018 | Chopped |
| L | 16 Dec, 2018 | Chopped |
| M | 16 Dec, 2018 | Holding pen |
| N | 16 Dec, 2018 | Chopped |
| O | 16 Dec, 2018 | Holding pen |
| P | 16 Dec, 2018 | Chopped |
| Q | 16 Dec, 2018 | Chopped |
| R | 16 Dec, 2018 | Chopped |
| S | 16 Dec, 2018 | Chopped |
| T | 16 Dec, 2018 | Chopped |
| U | 16 Dec, 2018 | Chopped |
| V | 16 Dec, 2018 | Chopped |
| W | 16 Dec, 2018 | Chopped |
| X | 16 Dec, 2018 | Holding pen |
| y | 16 Dec, 2018 | Chopped |
| Z | 16 Dec, 2018 | Chopped |
CATH Domains (25)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 6dzpa00 | 28 Feb, 2019 | 3.30.1390.20 | Assigned |
| 6dzpb00 | 28 Feb, 2019 | Holding pen | |
| 6dzpc00 | 28 Feb, 2019 | 2.20.28.120 | Assigned |
| 6dzpd00 | 28 Feb, 2019 | 1.10.287.3980 | Assigned |
| 6dzpD00 | 28 Feb, 2019 | Holding pen | |
| 6dzpe00 | 28 Feb, 2019 | Holding pen | |
| 6dzpE00 | 28 Feb, 2019 | Holding pen | |
| 6dzpF00 | 28 Feb, 2019 | Holding pen | |
| 6dzpI00 | 28 Feb, 2019 | 3.30.70.1730 | Assigned |
| 6dzpJ01 | 28 Feb, 2019 | 3.30.1550.10 | Assigned |
| 6dzpJ02 | 28 Feb, 2019 | 1.10.10.250 | Assigned |
| 6dzpK00 | 28 Feb, 2019 | Holding pen | |
| 6dzpL00 | 28 Feb, 2019 | 2.40.150.20 | Assigned |
| 6dzpN01 | 28 Feb, 2019 | 3.90.1170.10 | Assigned |
| 6dzpP01 | 28 Feb, 2019 | 3.30.420.100 | Assigned |
| 6dzpQ00 | 28 Feb, 2019 | Holding pen | |
| 6dzpR00 | 28 Feb, 2019 | Holding pen | |
| 6dzpS00 | 28 Feb, 2019 | Holding pen | |
| 6dzpT00 | 28 Feb, 2019 | 3.90.470.10 | Assigned |
| 6dzpU00 | 28 Feb, 2019 | 3.30.70.330 | Assigned |
| 6dzpV00 | 28 Feb, 2019 | Holding pen | |
| 6dzpW01 | 28 Feb, 2019 | Holding pen | |
| 6dzpW02 | 28 Feb, 2019 | Holding pen | |
| 6dzpy00 | 28 Feb, 2019 | Holding pen | |
| 6dzpZ00 | 28 Feb, 2019 | Holding pen |
UniProtKB Entries (28)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| A0R551 | RL332_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L33 2 |
| A0QS45 | RL11_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L11 |
| A0QSD1 | RL3_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L3 |
| A0QSD4 | RL2_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L2 |
| A0R554 | A0R554_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L31 |
| A0QYU7 | RL35_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L35 |
| I7FGD9 | I7FGD9_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L18 |
| A0QSD8 | RL16_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L16 |
| A0QYU6 | RL20_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L20 |
| A0R552 | A0R552_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L28 |
| A0QSG1 | RL5_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L5 |
| A0QSG4 | RL6_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L6 |
| A0QSF9 | RL14_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L14 |
| A0QSL9 | RL17_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L17 |
| A0QSD6 | RL22_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L22 |
| A0QSG8 | A0QSG8_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L15 |
| A0QSP8 | RL13_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L13 |
| A0QS62 | RL10_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L10 |
| A0QSG0 | RL24_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L24 |
| A0R7K0 | RL34_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L34 |
| A0QSD9 | RL29_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L29 |
| A0R150 | RL27_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L27 |
| A0QSG7 | RL30_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L30 |
| A0R7F6 | RL9_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L9 |
| A0QSD3 | RL23_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L23 |
| A0QSD2 | RL4_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L4 |
| A0R3D2 | A0R3D2_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L25 |
| A0QV42 | RL19_MYCS2 | Mycolicibacterium smegmatis MC2 155 | 50S ribosomal protein L19 |
