PDB 6ddg

PDB Links
Overview

PDB Information

PDB	6DDG
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	cryoEM-Guided Development of Antibiotics for Drug-Resistant Bacteria. Belousoff, M.J., Venugopal, H., Wright, A., Seoner, S., Stuart, I., Stubenrauch, C., Bamert, R.S., Lupton, D.W., Lithgow, T. ChemMedChem
Header	Ribosome/Antibiotic
Released	2018-05-10
Resolution	3.100
CATH Insert Date	24 Mar, 2019

PDB Images (49)

6ddg

PDB 6ddg

6ddg1

PDB Chain 6ddg1

6ddg2

PDB Chain 6ddg2

6ddga

PDB Chain 6ddga

6ddgA

PDB Chain 6ddgA

6ddgB

PDB Chain 6ddgB

6ddgC

PDB Chain 6ddgC

6ddgD

PDB Chain 6ddgD

6ddgE

PDB Chain 6ddgE

6ddgF

PDB Chain 6ddgF

6ddgG

PDB Chain 6ddgG

6ddgH

PDB Chain 6ddgH

6ddgI

PDB Chain 6ddgI

6ddgJ

PDB Chain 6ddgJ

6ddgK

PDB Chain 6ddgK

6ddgL

PDB Chain 6ddgL

6ddgM

PDB Chain 6ddgM

6ddgN

PDB Chain 6ddgN

6ddgO

PDB Chain 6ddgO

6ddgP

PDB Chain 6ddgP

6ddgQ

PDB Chain 6ddgQ

6ddgR

PDB Chain 6ddgR

6ddgS

PDB Chain 6ddgS

6ddgV

PDB Chain 6ddgV

6ddgW

PDB Chain 6ddgW

6ddgX

PDB Chain 6ddgX

6ddgY

PDB Chain 6ddgY

6ddgZ

PDB Chain 6ddgZ

6ddgA00

CATH Domain 6ddgA00

6ddga01

CATH Domain 6ddga01

6ddgB01

CATH Domain 6ddgB01

6ddgB02

CATH Domain 6ddgB02

6ddgB03

CATH Domain 6ddgB03

6ddgC00

CATH Domain 6ddgC00

6ddgD00

CATH Domain 6ddgD00

6ddgE00

CATH Domain 6ddgE00

6ddgF00

CATH Domain 6ddgF00

6ddgJ00

CATH Domain 6ddgJ00

6ddgK00

CATH Domain 6ddgK00

6ddgL00

CATH Domain 6ddgL00

6ddgM00

CATH Domain 6ddgM00

6ddgN01

CATH Domain 6ddgN01

6ddgO00

CATH Domain 6ddgO00

6ddgP00

CATH Domain 6ddgP00

6ddgQ00

CATH Domain 6ddgQ00

6ddgV00

CATH Domain 6ddgV00

6ddgW00

CATH Domain 6ddgW00

6ddgY01

CATH Domain 6ddgY01

6ddgZ00

CATH Domain 6ddgZ00

PDB Prints

PDB Chains (27)

Chain ID	Date inserted into CATH	CATH Status
1	24 Mar, 2019	Rejected
2	24 Mar, 2019	Rejected
a	24 Mar, 2019	Chopped
A	24 Mar, 2019	Chopped
B	24 Mar, 2019	Chopped
C	24 Mar, 2019	Chopped
D	24 Mar, 2019	Chopped
E	24 Mar, 2019	Chopped
F	24 Mar, 2019	Chopped
G	24 Mar, 2019	Holding pen
H	24 Mar, 2019	Holding pen
I	24 Mar, 2019	Holding pen
J	24 Mar, 2019	Chopped
K	24 Mar, 2019	Chopped
L	24 Mar, 2019	Chopped
M	24 Mar, 2019	Chopped
N	24 Mar, 2019	Chopped
O	24 Mar, 2019	Chopped
P	24 Mar, 2019	Chopped
Q	24 Mar, 2019	Chopped
R	24 Mar, 2019	Rejected
S	24 Mar, 2019	Write scan list
V	24 Mar, 2019	Chopped
W	24 Mar, 2019	Chopped
X	24 Mar, 2019	Holding pen
Y	24 Mar, 2019	Chopped
Z	24 Mar, 2019	Chopped

CATH Domains (21)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
6ddgA00	25 Mar, 2019		Holding pen
6ddga01	25 Mar, 2019	3.30.420.100	Assigned
6ddgB01	25 Mar, 2019	2.40.50.140	Assigned
6ddgB02	25 Mar, 2019		Holding pen
6ddgB03	25 Mar, 2019	4.10.950.10	Assigned
6ddgC00	25 Mar, 2019		Holding pen
6ddgD00	25 Mar, 2019		Holding pen
6ddgE00	25 Mar, 2019	3.90.470.10	Assigned
6ddgF00	25 Mar, 2019	3.30.70.330	Assigned
6ddgJ00	25 Mar, 2019		Holding pen
6ddgK00	25 Mar, 2019		Holding pen
6ddgL00	25 Mar, 2019		Holding pen
6ddgM00	25 Mar, 2019	3.30.1390.20	Assigned
6ddgN01	25 Mar, 2019		Holding pen
6ddgO00	25 Mar, 2019	2.20.28.120	Assigned
6ddgP00	25 Mar, 2019	1.10.287.3980	Assigned
6ddgQ00	25 Mar, 2019		Holding pen
6ddgV00	25 Mar, 2019		Holding pen
6ddgW00	25 Mar, 2019	2.40.150.20	Assigned
6ddgY01	25 Mar, 2019	3.90.1170.10	Assigned
6ddgZ00	25 Mar, 2019	3.90.1030.10	Assigned

UniProtKB Entries (22)

Accession	Gene ID	Taxon	Description
Q2FW13	RL16_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L16
Q2FW38	RL13_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L13
Q2FY22	RL332_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L33 2
Q2FZ42	RL19_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L19
Q2FW17	RL24_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L24
P60430	RL2_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L2
P0A0G2	RL30_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L30
Q2FW33	RL17_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L17
Q2FJE0	RL25_STAA3	Staphylococcus aureus subsp. aureus USA300	50S ribosomal protein L25
Q2FW11	RL22_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L22
Q2FW07	RL4_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L4
Q2FW22	RL18_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L18
Q2FUQ0	RL34_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L34
Q2FW14	RL29_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L29
Q2FW08	RL23_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L23
Q2FW06	RL3_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L3
Q2FXQ0	RL35_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L35
Q2FW16	RL14_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L14
Q2FXQ1	RL20_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L20
P0A0F8	RL15_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L15
Q2FXT0	RL27_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L27
Q2FZ60	RL28_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L28