PDB 5nrg
PDB Information
| PDB | 5NRG |
| Method | X-RAY DIFFRACTION |
| Host Organism | |
| Gene Source | |
| Primary Citation | Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus.
Nucleic Acids Res.
|
| Header | Ribosome |
| Released | 2017-04-23 |
| Resolution | 3.440 |
| CATH Insert Date | 14 Nov, 2017 |
PDB Images (50)
5nrg
PDB 5nrg
5nrg2
PDB Chain 5nrg2
5nrg3
PDB Chain 5nrg3
5nrgA
PDB Chain 5nrgA
5nrgB
PDB Chain 5nrgB
5nrgC
PDB Chain 5nrgC
5nrgD
PDB Chain 5nrgD
5nrgE
PDB Chain 5nrgE
5nrgG
PDB Chain 5nrgG
5nrgH
PDB Chain 5nrgH
5nrgI
PDB Chain 5nrgI
5nrgJ
PDB Chain 5nrgJ
5nrgK
PDB Chain 5nrgK
5nrgL
PDB Chain 5nrgL
5nrgM
PDB Chain 5nrgM
5nrgN
PDB Chain 5nrgN
5nrgO
PDB Chain 5nrgO
5nrgP
PDB Chain 5nrgP
5nrgQ
PDB Chain 5nrgQ
5nrgR
PDB Chain 5nrgR
5nrgS
PDB Chain 5nrgS
5nrgT
PDB Chain 5nrgT
5nrgV
PDB Chain 5nrgV
5nrgW
PDB Chain 5nrgW
5nrgX
PDB Chain 5nrgX
5nrgY
PDB Chain 5nrgY
5nrgZ
PDB Chain 5nrgZ
5nrg200
CATH Domain 5nrg200
5nrg300
CATH Domain 5nrg300
5nrgA01
CATH Domain 5nrgA01
5nrgA02
CATH Domain 5nrgA02
5nrgA03
CATH Domain 5nrgA03
5nrgB00
CATH Domain 5nrgB00
5nrgC00
CATH Domain 5nrgC00
5nrgD00
CATH Domain 5nrgD00
5nrgG00
CATH Domain 5nrgG00
5nrgH00
CATH Domain 5nrgH00
5nrgJ01
CATH Domain 5nrgJ01
5nrgK00
CATH Domain 5nrgK00
5nrgL01
CATH Domain 5nrgL01
5nrgM00
CATH Domain 5nrgM00
5nrgN00
CATH Domain 5nrgN00
5nrgO00
CATH Domain 5nrgO00
5nrgP00
CATH Domain 5nrgP00
5nrgQ00
CATH Domain 5nrgQ00
5nrgS01
CATH Domain 5nrgS01
5nrgS02
CATH Domain 5nrgS02
5nrgV00
CATH Domain 5nrgV00
5nrgW00
CATH Domain 5nrgW00
5nrgZ01
CATH Domain 5nrgZ01
PDB Prints
PDB Chains (26)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| 2 | 14 Nov, 2017 | Chopped |
| 3 | 14 Nov, 2017 | Chopped |
| A | 14 Nov, 2017 | Chopped |
| B | 14 Nov, 2017 | Chopped |
| C | 14 Nov, 2017 | Chopped |
| D | 14 Nov, 2017 | Chopped |
| E | 14 Nov, 2017 | Domchop review |
| G | 14 Nov, 2017 | Chopped |
| H | 14 Nov, 2017 | Chopped |
| I | 14 Nov, 2017 | Holding pen |
| J | 14 Nov, 2017 | Chopped |
| K | 14 Nov, 2017 | Chopped |
| L | 14 Nov, 2017 | Chopped |
| M | 14 Nov, 2017 | Chopped |
| N | 14 Nov, 2017 | Chopped |
| O | 14 Nov, 2017 | Chopped |
| P | 14 Nov, 2017 | Chopped |
| Q | 14 Nov, 2017 | Chopped |
| R | 14 Nov, 2017 | Holding pen |
| S | 14 Nov, 2017 | Chopped |
| T | 14 Nov, 2017 | Holding pen |
| V | 14 Nov, 2017 | Chopped |
| W | 14 Nov, 2017 | Chopped |
| X | 14 Nov, 2017 | Rejected |
| Y | 14 Nov, 2017 | Rejected |
| Z | 14 Nov, 2017 | Chopped |
CATH Domains (23)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5nrg200 | 10 Dec, 2017 | 1.10.287.3980 | Assigned |
| 5nrg300 | 10 Dec, 2017 | Holding pen | |
| 5nrgA01 | 12 Jul, 2018 | Check for files | |
| 5nrgA02 | 12 Jul, 2018 | Check for files | |
| 5nrgA03 | 12 Jul, 2018 | Check for files | |
| 5nrgB00 | 10 Dec, 2017 | Holding pen | |
| 5nrgC00 | 10 Dec, 2017 | Holding pen | |
| 5nrgD00 | 21 Feb, 2018 | Write scan list | |
| 5nrgG00 | 14 Dec, 2017 | Holding pen | |
| 5nrgH00 | 10 Dec, 2017 | 2.40.150.20 | Assigned |
| 5nrgJ01 | 10 Dec, 2017 | 3.90.1170.10 | Assigned |
| 5nrgK00 | 10 Dec, 2017 | 3.90.1030.10 | Assigned |
| 5nrgL01 | 10 Dec, 2017 | 3.30.420.100 | Assigned |
| 5nrgM00 | 10 Dec, 2017 | Holding pen | |
| 5nrgN00 | 10 Dec, 2017 | Holding pen | |
| 5nrgO00 | 10 Dec, 2017 | Holding pen | |
| 5nrgP00 | 10 Dec, 2017 | 3.90.470.10 | Assigned |
| 5nrgQ00 | 10 Dec, 2017 | 3.30.70.330 | Assigned |
| 5nrgS01 | 10 Dec, 2017 | 2.40.240.10 | Assigned |
| 5nrgS02 | 10 Dec, 2017 | 2.170.120.20 | Assigned |
| 5nrgV00 | 10 Dec, 2017 | Holding pen | |
| 5nrgW00 | 10 Dec, 2017 | 3.30.1390.20 | Assigned |
| 5nrgZ01 | 10 Dec, 2017 | Holding pen |
UniProtKB Entries (22)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| Q2FXQ1 | RL20_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L20 |
| Q2FW07 | RL4_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L4 |
| Q2FW06 | RL3_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L3 |
| Q2FXQ0 | RL35_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L35 |
| Q2FW33 | RL17_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L17 |
| Q2G0S0 | Q2G0S0_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L25 |
| P0A0G2 | RL30_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L30 |
| Q2FW38 | RL13_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L13 |
| Q2FZ42 | RL19_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L19 |
| Q2FW08 | RL23_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L23 |
| Q2FW16 | RL14_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L14 |
| Q2FW11 | RL22_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L22 |
| P0A0F8 | RL15_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L15 |
| P60430 | RL2_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L2 |
| Q2FUQ0 | RL34_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L34 |
| Q2FW14 | RL29_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L29 |
| Q2FW17 | RL24_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L24 |
| Q2FXT0 | RL27_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L27 |
| Q2FW13 | RL16_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L16 |
| Q2FW18 | RL5_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L5 |
| Q2FW21 | RL6_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L6 |
| Q2FW22 | RL18_STAA8 | Staphylococcus aureus subsp. aureus NCTC 8325 | 50S ribosomal protein L18 |
