CATH Superfamily 4.10.60.10

Browse Functional Families

ID	Function Family (FunFam) Name	Total Sequences	Structure?	Structural Representative	PDB Sites?	Alignment Diversity (0-100)
1	Gag polyprotein	1036	3D	1eskA00	-	89.6
2	cellular nucleic acid-binding protein-like isoform X1	546		-	-	85.4
3	serine/arginine-rich splicing factor RS2Z32-like isoform X1	231		-	-	73.9
4	cellular nucleic acid-binding protein isoform X2	230		-	-	56.8
5	E3 ubiquitin-protein ligase RBBP6	222	3D	2ysaA00	-	80.3
7	Protein lin-28 homolog A	220	3D	3ts2B02	-	79.1
6	cellular nucleic acid-binding protein-like isoform X1	212		-	-	67.6
8	Cleavage and polyadenylation specificity factor subunit 4	190		-	-	53.0
9	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	149		-	-	82.0
10	Zinc knuckle domain containing protein	138		-	-	43.7
11	splicing factor 1	122		-	-	82.3
12	Cellular nucleic acid-binding protein	102		-	-	68.2
13	Zinc finger CCHC domain-containing protein 9	101		-	-	67.3
14	RNA-binding motif protein 4	83		-	-	31.0
15	RNA-binding protein 4B isoform X1	82		-	-	29.9
16	Cellular nucleic acid-binding protein	76		-	-	82.4
18	Splicing factor, arginine/serine-rich 7	67		-	-	53.3
17	zinc finger CCHC domain-containing protein 9	67		-	-	67.5
19	Zinc finger CCHC domain-containing protein 2	66		-	-	36.6
20	Zinc finger CCHC domain-containing protein 7	59		-	-	76.5
21	zinc finger CCHC domain-containing protein 3	58		-	-	22.6
22	Serine/arginine-rich splicing factor RS2Z32	57		-	-	61.1
23	Cellular nucleic acid-binding protein homolog	55		-	-	72.0
24	terminal uridylyltransferase 7 isoform X1	55		-	-	14.5
25	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like	47		-	-	45.0
26	cellular nucleic acid-binding protein-like isoform X1	45		-	-	87.9
28	Gag polyprotein	41	3D	1wwgA00	-	21.9
27	serine/arginine-rich splicing factor 7 isoform X1	39		-	-	48.0
29	Serine/arginine-rich splicing factor RSZ22A	30		-	-	63.7
31	splicing factor 1	30		-	-	81.8
30	Branchpoint-bridging protein	30		-	-	78.4
32	Glycine-rich RNA-binding protein 7	26		-	-	78.2
33	Glycine-rich RNA-binding protein RZ1C	24		-	-	56.6
34	Universal minicircle sequence binding protein UMSBP	23		-	-	87.5
35	Cellular nucleic acid-binding protein	22		-	-	74.1
36	Gag polyprotein	22		-	-	80.7
37	DEAD-box ATP-dependent RNA helicase 3, chloroplastic	21		-	-	65.8
38	CCHC-type zinc finger, nucleic acid-binding protein a	21		-	-	83.0
39	Universal minicircle sequence binding protein, putative	20		-	-	36.6
40	Uncharacterized protein	20		-	-	8.3
41	Zinc finger CCHC domain-containing protein 7	18		-	-	36.7
43	Air1p	18	3D	3nybB00	-	37.1
42	Transcription or splicing factor-like protein	17		-	-	8.0
44	Putative universal minicircle sequence binding protein	16		-	-	53.3
48	CCHC-type zinc finger protein CG3800	15		-	-	69.8
46	Zinc finger protein GIS2	15		-	-	73.5
45	CCHC-type zinc finger protein-like	15		-	-	47.5
47	Glycine-rich RNA-binding protein RZ1C	15		-	-	34.5
51	Zinc finger protein containing protein	14		-	-	9.9
52	Putative universal minicircle sequence binding protein	14		-	-	67.6
53	RNA recognition motif domain containing protein	14		-	-	80.5
49	Zinc finger protein GIS2	14		-	-	74.6
50	Unplaced genomic scaffold supercont2.10, whole genome shotgun sequence	14		-	-	67.0
55	RNA-binding protein lark	13		-	-	22.9
54	AGAP008075-PA-like protein	13		-	-	60.3
57	Uncharacterized protein, isoform A	12		-	-	9.9
56	Splicing factor, arginine/serine-rich 7	12		-	-	16.9
58	Cellular nucleic acid-binding protein homolog	11		-	-	17.7
61	X16 splicing factor, isoform B	11		-	-	44.0
64	Unplaced genomic scaffold supercont1.38, whole genome shotgun sequence	11		-	-	13.3
60	Zinc knuckle domain protein	11		-	-	61.5
65	A/G-specific adenine DNA glycosylase	11		-	-	17.0
63	Unplaced genomic scaffold supercont1.17, whole genome shotgun sequence	11		-	-	0.0
66	CCHC-type zinc finger, nucleic acid-binding protein a	11		-	-	52.4
59	Gis2p	11		-	-	3.1
62	zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X2	11		-	-	7.0
71	Cleavage and polyadenylation-specific factor 4-like	10		-	-	70.6
74	Cleavage polyadenylation factor subunit	10		-	-	11.9
68	cellular nucleic acid-binding protein isoform X5	10		-	-	12.7
69	Glycine-rich RNA-binding protein RZ1A	10		-	-	24.5
75	CCHC-type zinc finger protein CG3800	10		-	-	69.6
72	Putative universal minicircle sequence binding protein	10		-	-	13.3
73	Msl5p	10		-	-	6.3
67	Air2p	10		-	-	55.5
70	Splicing factor, arginine/serine-rich 7	10		-	-	31.2
78	Unplaced genomic scaffold supercont2.10, whole genome shotgun sequence	9		-	-	6.0
80	RNA helicase, putative	9		-	-	48.4
82	RNA recognition motif domain containing protein	9		-	-	53.9
90	Gag polyprotein	9	3D	2ihxA00	-	10.1
81	Protein lin-28	9		-	-	8.1
76	Zinc knuckle domain protein Byr3 AFU_orthologue AFUA_1G07630	9		-	-	80.5
77	Zinc knuckle nucleic acid binding protein, putative	9		-	-	10.0
79	Nucleic acid binding protein	9		-	-	74.8
83	Protein CBG13587	9		-	-	61.9
85	Zinc knuckle nucleic acid binding protein, putative	8		-	-	36.4
89	RNA-binding protein lark	8		-	-	3.6
91	Zinc finger CCHC-type-containing 9	8		-	-	90.6
92	Universal minicircle sequence binding protein	8		-	-	65.1
86	ATP-dependent DNA helicase Q4	8		-	-	72.3
87	Protein CBG24470	8		-	-	75.9
84	Zinc knuckle domain protein Byr3	8		-	-	52.3
93	cellular nucleic acid-binding protein-like isoform X2	8		-	-	41.1
88	Cleavage and polyadenylation specificity factor subunit 4-like Protein	8		-	-	44.4
101	Serine/arginine-rich splicing factor RSZ21A isoform C	7		-	-	33.1
96	Zinc finger CCHC-type containing 7	7		-	-	19.4
105	Os05g0120100 protein	7		-	-	15.9
94	Zinc finger CCHC-type containing 13	7		-	-	71.0
99	Cellular nucleic acid-binding protein	7		-	-	10.0
95	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence	7		-	-	59.7
106	Zinc finger protein containing protein	7		-	-	4.8
98	Cellular nucleic acid-binding protein	7		-	-	7.3
102	Cellular nucleic acid binding protein, putative	7		-	-	77.2
100	Arginine/serine-rich splicing factor RSZ23 transcript III	7		-	-	24.4
104	Peptidyl-prolyl cis-trans isomerase	7		-	-	0.0
103	RNA binding motif protein 4.1	7		-	-	38.6
97	Universal minicircle sequence binding protein	7		-	-	26.6
116	Zinc knuckle CCHC-type	6		-	-	53.7
112	Ribosomal protein L15	6		-	-	90.0
108	Similar to zinc knuckle domain-containing protein	6		-	-	0.0
117	CCHC-type zinc finger protein CG3800	6		-	-	70.2
111	AAEL017419-PA	6		-	-	52.8
113	Cleavage and Polyadenylation Specificity Factor	6		-	-	12.0
109	Universal minicircle sequence binding protein UMSBP	6		-	-	73.1
119	Gag polyprotein	6		-	-	54.3
107	Putative Zinc knuckle domain protein	6		-	-	12.4
110	Glycine-rich RNA-binding protein RZ1B isoform C	6		-	-	28.2
115	Putative cleavage and polyadenylation specificity factor 30 kDa subunit	6		-	-	0.0
118	DNA-binding protein	6		-	-	73.6
114	Zinc knuckle domain containing protein	6		-	-	3.8
127	Glycine-rich RNA-binding protein RZ1B	5		-	-	0.0
128	DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform A	5		-	-	34.7
129	Phragmoplastin interacting protein 1	5		-	-	5.6
124	Protein CBG13587	5		-	-	61.4
120	Zinc knuckle CCHC-type	5		-	-	8.1
131	ATP-dependent DNA helicase PIF1	5		-	-	89.5
121	HCL585Cp	5		-	-	43.7
130	Cellular nucleic acid binding protein, putative	5		-	-	0.0
122	Uncharacterized protein	5		-	-	35.7
125	Putative e3 ubiquitin ligase	5		-	-	51.7
126	Serine and arginine-rich-splicing factor 7a	5		-	-	68.4
123	Cellular nucleic acid binding protein 2	5		-	-	53.2
136	Glycine-rich RNA-binding protein 10	4		-	-	29.5
137	Zinc knuckle domain containing protein	4		-	-	2.9
142	DEAD-Box Protein	4		-	-	0.0
132	Uncharacterized protein	4		-	-	21.9
147	Rts protein	4		-	-	0.0
139	Cold shock domain-containing protein 4	4		-	-	46.9
135	Putative poly-zinc finger protein 2	4		-	-	9.4
145	Uncharacterized protein	4		-	-	10.1
148	Replication protein A subunit	4		-	-	43.4
141	Uncharacterized protein	4		-	-	54.0
146	Nucleic acid binding protein, putative	4		-	-	0.0
144	ATP-dependent RNA helicase glh-2	4		-	-	53.3
138	Putative germ-line specific RNA helicase vasa protein	4		-	-	39.2
140	Uncharacterized protein	4		-	-	81.9
143	Replication protein A subunit	4		-	-	0.0
133	AFR646Wp	4		-	-	50.6
134	Cellular nucleic acid-binding protein	4		-	-	6.0
153	Cold shock domain-containing protein 3	3		-	-	29.6
155	tRNA-splicing endonuclease, putative	3		-	-	0.0
154	Replication protein A subunit	3		-	-	0.0
158	RNA binding motif protein 4 [	3		-	-	7.7
149	DNA-binding protein	3		-	-	0.0
152	Cold shock domain-containing protein 3	3		-	-	58.4
161	Terminal uridylyltransferase 7	3		-	-	12.8
157	Cleavage and polyadenylation specificity factor 30 kDa subunit	3		-	-	0.0
164	Zinc knuckle nucleic acid binding protein, putative AFU_orthologue AFUA_7G02190	3		-	-	33.1
160	Replication protein A subunit	3		-	-	0.0
151	RecQ helicase-like 4	3		-	-	45.3
163	Vasa	3		-	-	78.9
156	Replication protein A subunit	3		-	-	0.0
150	Putative e3 ubiquitin ligase	3		-	-	10.4
159	Terminal uridylyl transferase 4	3		-	-	8.1
162	Uncharacterized protein	3		-	-	50.7
180	Predicted protein	2		-	-	42.7
191	Replication protein A subunit	2		-	-	0.0
187	Cold shock protein 2	2		-	-	0.0
170	Zinc knuckle domain protein Byr3	2		-	-	0.0
207	Branchpoint-bridging protein	2		-	-	0.0
175	mRNA-binding translational activator	2		-	-	0.0
198	Cold shock domain-containing protein 4	2		-	-	0.0
202	Uncharacterized protein	2		-	-	5.1
184	SON DNA-binding protein, putative	2		-	-	0.0
181	Predicted protein	2		-	-	41.8
165	Uncharacterized protein	2		-	-	22.1
209	Uncharacterized protein	2		-	-	45.7
168	Uncharacterized protein	2		-	-	8.6
178	Uncharacterized protein	2		-	-	34.6
200	Branchpoint-bridging protein	2		-	-	4.4
192	Protein CBG28058	2		-	-	0.0
199	Uncharacterized protein	2		-	-	0.0
195	Uncharacterized protein	2		-	-	0.0
174	mRNA-binding translational activator	2		-	-	0.0
188	Cold shock domain protein 1	2		-	-	2.6
183	Serine/arginine-rich splicing factor RSZ21	2		-	-	0.0
203	Uncharacterized protein	2		-	-	4.5
204	Uncharacterized protein	2		-	-	0.0
179	Predicted protein	2		-	-	46.1
193	RNA binding motif protein 4.2	2		-	-	0.0
189	Peptidyl-prolyl cis-trans isomerase	2		-	-	4.6
177	Uncharacterized protein	2		-	-	2.9
205	Nucleic acid binding protein, putative	2		-	-	8.9
182	Ribosomal L28e protein family	2		-	-	5.0
167	WGS project CABT00000000 data, contig 2.31	2		-	-	7.8
186	ATP-dependent RNA helicase glh-4	2		-	-	35.6
173	Zinc finger CCHC-type containing 7	2		-	-	0.0
196	Cold shock domain protein 1	2		-	-	4.3
206	Uncharacterized protein	2		-	-	4.8
194	AGAP008075-PA	2		-	-	0.0
171	WGS project CABT00000000 data, contig 2.31	2		-	-	0.0
197	Uncharacterized protein	2		-	-	8.9
176	Uncharacterized protein	2		-	-	41.7
208	Uncharacterized protein	2		-	-	15.1
201	DNA topoisomerase	2		-	-	0.0
169	YALI0D12056p	2		-	-	0.0
190	Uncharacterized protein	2		-	-	0.0
172	Zf-CCHC type zinc finger protein	2		-	-	0.0
166	TIMELESS-interacting protein	2		-	-	0.0
185	Glycine-rich RNA-binding protein RZ1A	2		-	-	12.2
246	Alternative splicing factor SRp20/9G8, putative	1		-	-	0.0
272	Putative germ-line specific RNA helicase vasa protein	1		-	-	0.0
262	Peptidyl-prolyl cis-trans isomerase	1		-	-	0.0
212	Nucleic acid binding protein	1		-	-	0.0
232	CCHC-type zinc finger nucleic acid-binding protein	1		-	-	0.0
225	Zinc finger CCHC-type containing 13	1		-	-	0.0
257	DNA topoisomerase	1		-	-	0.0
229	Uncharacterized protein	1		-	-	0.0
222	Uncharacterized protein	1		-	-	0.0
217	Uncharacterized protein	1		-	-	0.0
247	ATP-dependent RNA helicase glh-3	1		-	-	0.0
210	Uncharacterized protein	1		-	-	0.0
252	DNA topoisomerase	1		-	-	0.0
271	mRNA 3'-end-processing protein YTH1	1		-	-	0.0
242	Uncharacterized protein	1		-	-	0.0
254	Uncharacterized protein	1		-	-	0.0
213	Predicted protein	1		-	-	0.0
224	Uncharacterized protein	1		-	-	0.0
263	Uncharacterized protein	1		-	-	0.0
267	Uncharacterized protein	1		-	-	0.0
233	Uncharacterized protein	1		-	-	0.0
273	Replication protein A subunit	1		-	-	0.0
243	Uncharacterized protein	1		-	-	0.0
228	Uncharacterized protein	1		-	-	0.0
268	Uncharacterized protein	1		-	-	0.0
238	Uncharacterized protein	1		-	-	0.0
253	Uncharacterized protein	1		-	-	0.0
258	Uncharacterized protein	1		-	-	0.0
248	Uncharacterized protein	1		-	-	0.0
211	Uncharacterized protein	1		-	-	0.0
236	Uncharacterized protein	1		-	-	0.0
218	Uncharacterized protein	1		-	-	0.0
234	Uncharacterized protein	1		-	-	0.0
221	Uncharacterized protein	1		-	-	0.0
260	Universal minicircle sequence binding protein UMSBP	1		-	-	0.0
227	Uncharacterized protein	1		-	-	0.0
264	Uncharacterized protein	1		-	-	0.0
255	Uncharacterized protein	1		-	-	0.0
274	Uncharacterized protein	1		-	-	0.0
250	DNA topoisomerase	1		-	-	0.0
259	Uncharacterized protein	1		-	-	0.0
249	Rothmund-thomson syndrome DNA helicase recq4, putative	1		-	-	0.0
240	Uncharacterized protein	1		-	-	0.0
230	Uncharacterized protein	1		-	-	0.0
214	Uncharacterized protein	1		-	-	0.0
239	Uncharacterized protein	1		-	-	0.0
269	Uncharacterized protein	1		-	-	0.0
219	Uncharacterized protein	1		-	-	0.0
220	Uncharacterized protein	1		-	-	0.0
226	Uncharacterized protein	1		-	-	0.0
244	RNA-binding region RNP-1 domain-containing protein	1		-	-	0.0
237	Uncharacterized protein	1		-	-	0.0
235	Uncharacterized protein	1		-	-	0.0
265	Predicted protein	1		-	-	0.0
251	DNA topoisomerase	1		-	-	0.0
256	Uncharacterized protein	1		-	-	0.0
215	Uncharacterized protein	1		-	-	0.0
245	Uncharacterized protein	1		-	-	0.0
241	Uncharacterized protein	1		-	-	0.0
270	Uncharacterized protein	1		-	-	0.0
266	Uncharacterized protein	1		-	-	0.0
231	Uncharacterized protein	1		-	-	0.0
261	Uncharacterized protein	1		-	-	0.0
223	Uncharacterized protein	1		-	-	0.0
216	Uncharacterized protein	1		-	-	0.0