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CATH Superfamily 3.30.1360.10

RNA polymerase, RBP11-like subunit

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
RNA polymerase, RBP11-like subunit
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.

Browse Functional Families

ID Function Family (FunFam) Name Total Sequences Enzyme? Structure? Structural Representative PDB Sites? Alignment Diversity (0-100)
1
DNA-directed RNA polymerase subunit alpha
4825
3D
 6n61B01 - 94.6
2
DNA-directed RNA polymerase subunit alpha
702 - - 84.5
3
DNA-directed RNA polymerase II subunit RPB11
458
3D
 5iydK00 - 96.1
4
DNA-directed RNA polymerase II subunit RPB3
371
3D
 3h0gO01 - 92.0
5
Dna-directed rna polymerases i and iii subunit
266
3D
 6hlsC01 - 83.4
6
DNA-directed RNA polymerases I and III subunit RPAC2
146 - - 96.8
7
DNA-directed RNA polymerase II subunit RPB11-like protein
95 - - 77.6
8
RNA polymerase II core subunit
51 - - 83.1
12
DNA-directed RNA polymerases I and III subunit RPAC2
46
3D
 6hlsK00 - 73.5
9
RNA polymerase I and III subunit C
32 - - 66.5
11
Related to DNA-directed RNA polymerase 13.3K chain
26 - - 87.5
10
DNA-directed RNA polymerase subunit alpha
26 - - 17.1
13
RNA polymerase I and III subunit C
21 - - 51.9
14
DNA-directed RNA polymerase II subunit RPB3
20 - - 9.8
15
DNA-directed RNA polymerase alpha chain,putative
20 - - 12.1
16
DNA-directed RNA polymerases I and III subunit RPAC1
17 - - 8.9
24
DNA-directed RNA polymerase II subunit RPB3
17
3D
 5iydC01 - 46.6
17
DNA-directed RNA polymerase I-like protein
15 - - 87.8
18
DNA-directed RNA polymerase I/III subunit, putative
14 - - 79.3
20
RH25219p
13 - - 28.1
19
DNA-directed RNA polymerase-like protein
13 - - 33.6
21
DNA-directed RNA polymerase II subunit RPB3
11 - - 3.8
22
DNA-directed RNA polymerase subunit alpha
10 - - 13.7
23
DNA-directed RNA polymerase II subunit RPB11
10 - - 1.0
26
RNA polymerase II subunit Rpb11
7 - - 10.4
27
RNA polymerases II subunit, putative
7 - - 5.3
28
DNA-directed RNA polymerase II subunit, putative
7 - - 0.0
25
Probable DNA-directed RNA polymerases I and III subunit RPAC2
7 - - 48.9
29
Uncharacterized protein
6 - - 16.4
31
DNA-directed RNA polymerase RPB3
6 - - 5.5
30
RNA polymerase I and III subunit C
6 - - 54.9
32
DNA-directed RNA polymerase II subunit RPB11
6 - - 43.4
37
DNA-directed RNA polymerase II subunit RPB11
5
3D
 3h0gW00 - 9.3
33
DNA-directed RNA polymerase II, putative
5 - - 29.3
34
DNA-directed RNA polymerase I and III 14 kDa polypeptide
AFU_orthologue AFUA_6G04610
5 - - 42.0
35
Expressed protein
4 - - 8.6
39
DNA-directed RNA polymerase subunit alpha
3 - - 69.7
36
DNA-directed RNA polymerases II IV and V subunit 11
3 - - 10.1
38
Putative DNA-directed RNA polymerase,alpha subunit
3 - - 10.3
48
DNA-directed RNA polymerases II IV and V subunit 3
2 - - 3.9
40
DNA-directed RNA polymerase subunit alpha
2 - - 5.9
41
Uncharacterized protein
2 - - 22.7
43
RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
2 - - 0.0
44
Uncharacterized protein
2 - - 2.4
49
Os02g0723600 protein
2 - - 0.0
42
DNA-directed RNA polymerases I and III 16 kDa polypeptide
2 - - 9.7
50
AGAP008771-PA
2 - - 7.4
46
DNA-directed RNA polymerases II IV and V subunit 11
2 - - 7.8
45
RNA polymerase I, and III, AC40 subunit
2 - - 1.4
47
DNA-directed RNA polymerases II IV and V subunit 3
2 - - 0.0
61
RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
1 - - 0.0
55
Uncharacterized protein
1 - - 0.0
68
DNA-directed RNA polymerases II IV and V subunit 11
1 - - 0.0
60
RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
1 - - 0.0
69
Serine/threonine-protein kinase CG17528-like Protein
1 - - 0.0
63
RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
1 - - 0.0
62
RNApolymerase 14 kDa subunit
1 - - 0.0
56
Uncharacterized protein
1 - - 0.0
58
Uncharacterized protein
1 - - 0.0
51
Small RNA polymerase
1 - - 0.0
57
Uncharacterized protein
1 - - 0.0
64
RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
1 - - 0.0
52
Uncharacterized protein
1 - - 0.0
65
DNA-directed RNA polymerase, alpha subunit, putative
1 - - 0.0
53
RNA polymerase I and III subunit D
1 - - 0.0
66
DNA-directed RNA polymerases II IV and V subunit 11
1 - - 0.0
59
Uncharacterized protein
1 - - 0.0
67
Uncharacterized protein
1 - - 0.0
54
Uncharacterized protein
1 - - 0.0