CATH Classification
Level | CATH Code | Description |
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1 | Mainly Alpha |
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1.10 | Orthogonal Bundle |
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1.10.3550 | eoxyguanosinetriphosphate triphosphohydrolase fold |
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1.10.3550.20 |
Domain Context
CATH Clusters
Superfamily | 1.10.3550.20 |
Functional Family |
Enzyme Information
6.5.1.3 |
RNA ligase (ATP).
based on mapping to UniProt P00971
ATP + (ribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(ribonucleotide)(m) = (ribonucleotide)(n+m) + AMP + diphosphate.
-!- The enzyme catalyzes the ligation of RNA strands with 3'-hydroxyl and 5'-phosphate termini, forming a phosphodiester and sealing certain types of single-strand breaks in RNA. -!- Catalysis occurs by a three-step mechanism, starting with the activation of the enzyme by ATP, forming a phosphoramide bond between adenylate and a lysine residue. -!- The adenylate group is then transferred to the 5'-phosphate terminus of the substrate, forming the capped structure 5'-(5'-diphosphoadenosine)-(RNA). -!- Finally, the enzyme catalyzes a nucleophilic attack of the 3'-OH terminus on the capped terminus, which results in formation of the phosphodiester bond and release of the adenylate.
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UniProtKB Entries (1)
P00971 |
RLIG_BPT4
Escherichia virus T4
T4 RNA ligase 1
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PDB Structure
PDB | 2C5U |
External Links | |
Method | X-RAY DIFFRACTION |
Organism | |
Primary Citation |
Molecular Architecture and Ligand Recognition Determinants for T4 RNA Ligase
J.Biol.Chem.
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