CATH Classification
| Level | CATH Code | Description | 
|---|---|---|
|   | 2 | Mainly Beta | 
|   | 2.30 | Roll | 
|   | 2.30.42 | Pdz3 Domain | 
|   | 2.30.42.10 | PDZ domain | 
Domain Context
CATH Clusters
| Superfamily | 2.30.42.10 | 
| Functional Family | Periplasmic serine peptidase DegS | 
Enzyme Information
| 3.4.21.107 | Peptidase Do. based on mapping to UniProt P0AEE3 Acts on substrates that are at least partially unfolded. The cleavage site P1 residue is normally between a pair of hydrophobic residues, such as Val-|-Val. -!- This serine endopeptidase is essential for the clearance of denatured or aggregated proteins from the inner-membrane and periplasmic space in Escherichia coli. -!- Natural substrates of the enzyme include colicin A lysis protein, pilin subunits and MalS from E.coli. -!- The enzyme has weak peptidase activity with casein and other non- native substrates. -!- The peptidase acts as a chaperone at low temperatures but switches to a peptidase (heat shock protein) at higher temperatures. -!- Molecular chaperones and peptidases control the folded state of proteins by recognizing hydrophobic stretches of polypeptide that become exposed by misfolding or unfolding. -!- They then bind these hydrophobic substrates to prevent aggregation or assist in protein refolding. -!- If attempts at refolding fail, then irreversibly damaged proteins are degraded by peptidases such as this enzyme. -!- Belongs to peptidase family S1B. | 
UniProtKB Entries (1)
| P0AEE3 | DEGS_ECOLI Escherichia coli K-12 Serine endoprotease DegS | 
PDB Structure
| PDB | 1SOZ | 
| External Links | |
| Method | X-RAY DIFFRACTION | 
| Organism | Escherichia | 
| Primary Citation | Crystal structure of the DegS stress sensor: How a PDZ domain recognizes misfolded protein and activates a protease Cell(Cambridge,Mass.) | 
