PDB 5xog

PDB Information

PDB5XOG
MethodX-RAY DIFFRACTION
Host OrganismEscherichia coli
Gene SourceKomagataella pastoris
Primary Citation
Structure of the complete elongation complex of RNA polymerase II with basal factors
Ehara, H., Yokoyama, T., Shigematsu, H., Yokoyama, S., Shirouzu, M., Sekine, S.I.
Science
HeaderTranscription
Released2017-05-28
Resolution3.000
CATH Insert Date14 Nov, 2017

PDB Images (33)

PDB Prints

PDB Chains (17)

Chain ID Date inserted into CATH CATH Status
A 14 Nov, 2017 Holding pen
B 14 Nov, 2017 Holding pen
C 14 Nov, 2017 Chopped
D 14 Nov, 2017 Chopped
E 14 Nov, 2017 Chopped
F 14 Nov, 2017 Chopped
G 14 Nov, 2017 Chopped
H 14 Nov, 2017 Chopped
I 14 Nov, 2017 Holding pen
J 14 Nov, 2017 Chopped
K 14 Nov, 2017 Chopped
L 14 Nov, 2017 Chopped
M 14 Nov, 2017 Chopped
N 14 Nov, 2017 Rejected
P 14 Nov, 2017 Rejected
T 14 Nov, 2017 Rejected
W 14 Nov, 2017 Chopped

CATH Domains (15)

Domain ID Date inserted into CATH Superfamily CATH Status
5xogC01 10 Dec, 2017 3.30.1360.10 Assigned
5xogC02 10 Dec, 2017 2.170.120.12 Assigned
5xogD01 10 Dec, 2017 Holding pen
5xogD02 10 Dec, 2017 1.20.1250.40 Assigned
5xogE01 10 Dec, 2017 3.40.1340.10 Assigned
5xogE02 10 Dec, 2017 3.90.940.20 Assigned
5xogF00 10 Dec, 2017 3.90.940.10 Assigned
5xogG01 10 Dec, 2017 3.30.1490.120 Assigned
5xogG02 10 Dec, 2017 2.40.50.140 Assigned
5xogH00 10 Dec, 2017 2.40.50.140 Assigned
5xogJ00 10 Dec, 2017 1.10.10.60 Assigned
5xogK00 10 Dec, 2017 3.30.1360.10 Assigned
5xogL00 10 Dec, 2017 2.20.28.30 Assigned
5xogM00 16 Dec, 2017 2.20.25.190 Assigned
5xogW00 16 Dec, 2017 Write scan list

UniProtKB Entries (14)

Accession Gene ID Taxon Description
C4R9A1 C4R9A1_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit
C4R3P8 C4R3P8_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III
C4QZQ7 C4QZQ7_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerase subunit beta
C4R4Y0 C4R4Y0_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerase subunit
A0A1B2JER8 A0A1B2JER8_PICPA Komagataella pastoris Transcription elongation factor 1 homolog
C4R2U9 C4R2U9_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit B32
C4R009 C4R009_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III
C4R7L2 C4R7L2_KOMPG Komagataella phaffii GS115 RNA polymerase II third largest subunit B44, part of central core
F2QUC3 F2QUC3_KOMPC Komagataella phaffii CBS 7435 Spt4/5 complex component
C4R1V1 C4R1V1_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III
C4R3Z5 C4R3Z5_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit B12.5
F2QMI1 F2QMI1_KOMPC Komagataella phaffii CBS 7435 RNA polymerase subunit ABC10-alpha
C4R273 C4R273_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerases I, II, and III subunit RPABC3
F2QPE6 F2QPE6_KOMPC Komagataella phaffii CBS 7435 DNA-directed RNA polymerase subunit
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