PDB 5oik

PDB Information

PDB5OIK
MethodELECTRON MICROSCOPY
Host OrganismEscherichia coli BL21(DE3)
Gene SourceHomo sapiens
Primary Citation
Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp.
Bernecky, C., Plitzko, J.M., Cramer, P.
Nat. Struct. Mol. Biol.
HeaderTranscription
Released2017-07-18
Resolution3.700
CATH Insert Date14 Nov, 2017

PDB Images (31)

PDB Prints

PDB Chains (17)

Chain ID Date inserted into CATH CATH Status
A 14 Nov, 2017 Holding pen
B 14 Nov, 2017 Holding pen
C 14 Nov, 2017 Chopped
D 14 Nov, 2017 Chopped
E 14 Nov, 2017 Chopped
F 14 Nov, 2017 Chopped
G 14 Nov, 2017 Chopped
H 14 Nov, 2017 Chopped
I 14 Nov, 2017 Holding pen
J 14 Nov, 2017 Chopped
K 14 Nov, 2017 Chopped
L 14 Nov, 2017 Chopped
N 14 Nov, 2017 Rejected
P 14 Nov, 2017 Rejected
T 14 Nov, 2017 Rejected
Y 14 Nov, 2017 Chopped
Z 14 Nov, 2017 Domchop review

CATH Domains (13)

Domain ID Date inserted into CATH Superfamily CATH Status
5oikC01 10 Dec, 2017 3.30.1360.10 Assigned
5oikC02 10 Dec, 2017 2.170.120.12 Assigned
5oikD00 10 Dec, 2017 1.20.1250.40 Assigned
5oikE01 10 Dec, 2017 3.40.1340.10 Assigned
5oikE02 10 Dec, 2017 3.90.940.20 Assigned
5oikF00 10 Dec, 2017 3.90.940.10 Assigned
5oikG01 10 Dec, 2017 3.30.1490.120 Assigned
5oikG02 10 Dec, 2017 2.40.50.140 Assigned
5oikH01 10 Dec, 2017 2.40.50.140 Assigned
5oikJ00 10 Dec, 2017 1.10.10.60 Assigned
5oikK00 10 Dec, 2017 3.30.1360.10 Assigned
5oikL00 10 Dec, 2017 2.20.28.30 Assigned
5oikY01 16 Dec, 2017 3.30.40.210 Assigned

UniProtKB Entries (14)

Accession Gene ID Taxon Description
Q32P78 RPAB5_BOVIN Bos taurus DNA-directed RNA polymerases I, II, and III subunit RPABC5
F2Z4H3 F2Z4H3_BOVIN Bos taurus DNA-directed RNA polymerases I, II, and III subunit RPABC3
O00267 SPT5H_HUMAN Homo sapiens Transcription elongation factor SPT5
Q3ZBC0 RPAB4_BOVIN Bos taurus DNA-directed RNA polymerases I, II, and III subunit RPABC4
Q2T9T3 RPAB1_BOVIN Bos taurus DNA-directed RNA polymerases I, II, and III subunit RPABC1
Q1JQ91 Q1JQ91_BOVIN Bos taurus Polymerase (RNA) II (DNA directed) polypeptide D
G3MZY8 G3MZY8_BOVIN Bos taurus DNA-directed RNA polymerase subunit
Q3T0Q3 RPB3_BOVIN Bos taurus DNA-directed RNA polymerase II subunit RPB3
Q32P79 RPB11_BOVIN Bos taurus DNA-directed RNA polymerase II subunit RPB11
A5PJW8 A5PJW8_BOVIN Bos taurus DNA-directed RNA polymerase subunit beta
P63272 SPT4H_HUMAN Homo sapiens Transcription elongation factor SPT4
Q32P73 RPB9_BOVIN Bos taurus DNA-directed RNA polymerase II subunit RPB9
Q32PE0 RPAB2_BOVIN Bos taurus DNA-directed RNA polymerases I, II, and III subunit RPABC2
Q5E9B8 RPB7_BOVIN Bos taurus DNA-directed RNA polymerase II subunit RPB7